Erinaceus europaeus

western European hedgehog

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mEriEur2: GCA_950295315.1 mEriEur2: GCA_950295305.1
ENA mEriEur2: GCA_950295315.1 mEriEur2: GCA_950295305.1
UCSC Genome Browser mEriEur2: GCA_950295315.1 mEriEur2: GCA_950295305.1

metadata.yaml (view) (edit on github)
species:
  short_name: mEriEur
  name: Erinaceus europaeus
  taxon_id: 9365
  common_name: western European hedgehog
  order:
    name: Erinaceomorpha
  family:
    name: Erinaceidae
  individuals:
    - short_name: mEriEur1
      biosample_id: SAMEA13207413
      sex: male
    - short_name: mEriEur2
      biosample_id: SAMEA13207416
      sex: female
  genome_size: 3579480000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mEriEur2 79.87 Gbp 22.31x 140.5 GiB
Arima mEriEur1 508.70 Gbp 142.12x 147.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.58 Gbp.
Last upload on 11 March 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mEriEur1 Arima 508.70 Gbp 142.12x 147.8 GiB
mEriEur2 PacBio HiFi (.bam) 79.87 Gbp 22.31x 140.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.58 Gbp.
Last upload on 11 March 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 28 April 2023
mEriEur2.pri.cur.20230428.fasta.gz (767.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 124 2.24 Mbp 2 204.40 Mbp
20 313 1.63 Mbp 4 154.22 Mbp
30 562 1.26 Mbp 7 128.54 Mbp
40 891 0.94 Mbp 10 125.53 Mbp
50 1342 0.68 Mbp 13 101.76 Mbp
60 1975 464.63 Kbp 17 82.37 Mbp
70 3019 240.18 Kbp 21 58.52 Mbp
80 0 0
90 0 0
100 0 0
0.760x 4935 2.72 Gbp 1175 2.72 Gbp
NG based on genome size 3.58 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 28 April 2023
mEriEur2.alt.cur.20230428.fasta.gz (522.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 714 312.81 Kbp 714 313.05 Kbp
20 2348 164.31 Kbp 2347 164.31 Kbp
30 5325 89.48 Kbp 5324 89.48 Kbp
40 11317 40.89 Kbp 11316 40.89 Kbp
50 23352 22.52 Kbp 23351 22.52 Kbp
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.517x 26601 1.85 Gbp 26600 1.85 Gbp
NG based on genome size 3.58 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.