Esox lucius

northern pike

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fEsoLuc1: GCA_011004845.1 fEsoLuc1: GCA_011004835.1
ENA fEsoLuc1: GCA_011004845.1 fEsoLuc1: GCA_011004835.1
UCSC Genome Browser fEsoLuc1: GCA_011004845.1 fEsoLuc1: GCA_011004835.1

metadata.yaml (view) (edit on github)
species:
  short_name: fEsoLuc
  name: Esox lucius 
  taxon_id: 8010
  common_name: northern pike
  order:
    name: Esociformes 
  family:
    name: Esocidae
  individuals:
    - short_name: fEsoLuc1
  genome_size: 1105706148
  genome_size_method: Genomescope
  project: [ vgp ]
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fEsoLuc1 73.03 Gbp 66.04x 127.7 GiB
10x fEsoLuc1 66.34 Gbp 60.00x 31.5 GiB
Bionano fEsoLuc1 N/A 630.74x 824.0 MiB
Arima fEsoLuc1 125.01 Gbp 113.06x 73.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.11 Gbp.
Last upload on 7 October 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fEsoLuc1 PacBio CLR 73.03 Gbp 66.04x 127.7 GiB
10x 66.34 Gbp 60.00x 31.5 GiB
Bionano N/A 630.74x 824.0 MiB
Arima 125.01 Gbp 113.06x 73.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.11 Gbp.
Last upload on 7 October 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 10 January 2020
fEsoLuc1.pri.cur.20200110.fasta.gz (264.0 MiB)

Quality: 25.6 errors/Mb (QV=45.92)

Contigs Scaffolds
NG LG Len LG Len
10 2 39.97 Mbp 2 48.49 Mbp
20 5 35.10 Mbp 4 45.70 Mbp
30 8 28.11 Mbp 7 39.76 Mbp
40 12 25.02 Mbp 9 38.25 Mbp
50 18 18.75 Mbp 12 36.49 Mbp
60 24 12.45 Mbp 15 34.84 Mbp
70 37 6.15 Mbp 19 29.72 Mbp
80 67 1.72 Mbp 23 25.24 Mbp
90 0 0
100 0 0
0.830x 164 0.92 Gbp 52 0.92 Gbp
NG based on genome size 1.11 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 10 January 2020
fEsoLuc1.alt.cur.20200110.fasta.gz (182.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 128 0.56 Mbp 125 0.56 Mbp
20 384 340.65 Kbp 379 341.50 Kbp
30 787 225.88 Kbp 779 227.07 Kbp
40 1397 145.29 Kbp 1386 145.58 Kbp
50 2423 78.09 Kbp 2410 78.39 Kbp
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.563x 3824 0.62 Gbp 3813 0.62 Gbp
NG based on genome size 1.11 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fEsoLuc1.MT.20191002.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.