Girardinichthys multiradiatus

dark-edged splitfin

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metadata.yaml (view) (edit on github)
species:
  common_name: dark-edged splitfin
  name: Girardinichthys multiradiatus
  order:
    name: Cyprinodontiformes
  family:
    name: Goodeidae
  short_name: fGirMul
  taxon_id: 208333
  individuals:
  -
    short_name: fGirMul3
    sex: male
    provider: Manfred Schartl
  -
    short_name: fGirMul4
    sex: male
    provider: Manfred Schartl
  -
    short_name: fGirMul5
    sex: male
    provider: Manfred Schartl
  genome_size: 1150000000
  genome_size_method: GOAT
  project: [ ]
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fGirMul3 78.92 Gbp 68.62x 135.3 GiB
10x fGirMul3 58.69 Gbp 51.04x 27.4 GiB
Bionano fGirMul4 N/A 1911.07x 3.6 GiB
Arima fGirMul5 106.28 Gbp 92.42x 48.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.15 Gbp.
Last upload on 8 November 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fGirMul3 PacBio CLR 78.92 Gbp 68.62x 135.3 GiB
10x 58.69 Gbp 51.04x 27.4 GiB
fGirMul4 Bionano N/A 1911.07x 3.6 GiB
fGirMul5 Arima 106.28 Gbp 92.42x 48.8 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.15 Gbp.
Last upload on 8 November 2022.
Assemblies
Individual 3 Primary Assembly
Version assembly_curated from 15 December 2020
fGirMul3.pri.cur.20201215.fasta.gz (357.2 MiB)

Quality: 22.4 errors/Mb (QV=46.49)

Contigs Scaffolds
NG LG Len LG Len
10 3 31.59 Mbp 2 53.52 Mbp
20 7 29.25 Mbp 4 52.24 Mbp
30 11 21.15 Mbp 6 51.97 Mbp
40 17 17.88 Mbp 8 50.04 Mbp
50 24 13.82 Mbp 11 47.42 Mbp
60 34 9.76 Mbp 13 45.87 Mbp
70 48 7.03 Mbp 16 42.99 Mbp
80 69 4.31 Mbp 18 42.51 Mbp
90 108 1.97 Mbp 21 40.38 Mbp
100 0 71 15.76 Kbp
0.995x 481 1.14 Gbp 72 1.15 Gbp
NG based on genome size 1.15 Gbp.
Individual 3 Alternate Assembly
Version assembly_curated from 15 December 2020
fGirMul3.alt.cur.20201215.fasta.gz (301.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 19 4.33 Mbp 19 4.33 Mbp
20 53 2.57 Mbp 53 2.57 Mbp
30 110 1.67 Mbp 110 1.67 Mbp
40 205 0.93 Mbp 205 0.93 Mbp
50 394 426.73 Kbp 394 426.73 Kbp
60 802 198.93 Kbp 802 198.93 Kbp
70 1616 102.23 Kbp 1616 102.23 Kbp
80 3253 48.40 Kbp 3253 48.40 Kbp
90 0 0
100 0 0
0.885x 7380 1.02 Gbp 7380 1.02 Gbp
NG based on genome size 1.15 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.