Gobio gobio

gudgeon

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fGobGob1: GCA_949357685.1 fGobGob1: GCA_949357705.1
ENA fGobGob1: GCA_949357685.1 fGobGob1: GCA_949357705.1
UCSC Genome Browser fGobGob1: GCA_949357685.1 fGobGob1: GCA_949357705.1

metadata.yaml (view) (edit on github)
species:
  short_name: fGobGob
  name: Gobio gobio
  taxon_id: 27704
  common_name: gudgeon
  order:
    name: Cypriniformes
  family:
    name: Cyprinidae
  individuals:
    - short_name: fGobGob1
      biosample_id: SAMEA11296538
      sex:
  genome_size: 1613700000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fGobGob1 43.88 Gbp 27.19x 123.2 GiB
Arima fGobGob1 162.84 Gbp 100.91x 47.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.61 Gbp.
Last upload on 8 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fGobGob1 PacBio HiFi (.bam) 43.88 Gbp 27.19x 123.2 GiB
Arima 162.84 Gbp 100.91x 47.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.61 Gbp.
Last upload on 8 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 28 February 2023
fGobGob1.pri.cur.20230228.fasta.gz (400.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 20 6.33 Mbp 1 80.60 Mbp
20 48 4.77 Mbp 4 65.97 Mbp
30 87 3.67 Mbp 6 59.21 Mbp
40 138 2.89 Mbp 9 58.33 Mbp
50 201 2.32 Mbp 12 54.98 Mbp
60 279 1.79 Mbp 15 54.03 Mbp
70 385 1.27 Mbp 18 50.72 Mbp
80 549 0.71 Mbp 21 49.16 Mbp
90 1071 75.00 Kbp 63 142.21 Kbp
100 0 0
0.905x 1277 1.46 Gbp 231 1.46 Gbp
NG based on genome size 1.61 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 28 February 2023
fGobGob1.alt.cur.20230228.fasta.gz (372.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 116 1.07 Mbp 115 1.08 Mbp
20 301 0.73 Mbp 299 0.73 Mbp
30 554 0.55 Mbp 552 0.55 Mbp
40 889 421.73 Kbp 886 422.63 Kbp
50 1332 317.62 Kbp 1329 317.62 Kbp
60 1947 217.36 Kbp 1942 217.76 Kbp
70 2917 124.66 Kbp 2911 124.89 Kbp
80 5141 40.30 Kbp 5133 40.30 Kbp
90 0 0
100 0 0
0.836x 7253 1.35 Gbp 7245 1.35 Gbp
NG based on genome size 1.61 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.