Gymnoscopelus microlampas

minispotted lanternfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fGymMic
  name: Gymnoscopelus microlampas
  taxon_id: 1090481
  common_name: minispotted lanternfish
  order:
    name: Myctophiformes
  family:
    name: Myctophidae
  individuals:
    - short_name: fGymMic1
      biosample_id: SAMEA12815435
      sex:
  genome_size: 1907100000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fGymMic1 71.23 Gbp 37.35x 36.3 GiB
Arima fGymMic1 228.36 Gbp 119.74x 67.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.91 Gbp.
Last upload on 8 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fGymMic1 PacBio HiFi (.bam) 71.23 Gbp 37.35x 36.3 GiB
Arima 228.36 Gbp 119.74x 67.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.91 Gbp.
Last upload on 8 August 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 8 September 2023
fGymMic1.pri.cur.20230908.fasta.gz (361.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 40 3.48 Mbp 4 60.87 Mbp
20 106 2.52 Mbp 7 58.68 Mbp
30 192 1.94 Mbp 10 56.65 Mbp
40 305 1.45 Mbp 13 52.35 Mbp
50 466 0.99 Mbp 17 50.49 Mbp
60 719 0.56 Mbp 21 47.15 Mbp
70 0 0
80 0 0
90 0 0
100 0 0
0.691x 1772 1.32 Gbp 374 1.32 Gbp
NG based on genome size 1.91 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 8 September 2023
fGymMic1.alt.cur.20230908.fasta.gz (354.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 155 0.89 Mbp 154 0.89 Mbp
20 418 0.59 Mbp 417 0.60 Mbp
30 805 415.61 Kbp 804 415.61 Kbp
40 1358 288.00 Kbp 1356 288.25 Kbp
50 2196 179.95 Kbp 2194 180.00 Kbp
60 3796 75.80 Kbp 3794 75.80 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.671x 7672 1.28 Gbp 7669 1.28 Gbp
NG based on genome size 1.91 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 4 August 2023
fGymMic1.MT.20230804.fasta.gz (5.8 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.