Harpia harpyja

Harpy eagle

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bHarHar1: GCA_026419915.1 bHarHar1: GCA_026419925.1
ENA bHarHar1: GCA_026419915.1 bHarHar1: GCA_026419925.1
UCSC Genome Browser bHarHar1: GCA_026419915.1 bHarHar1: GCA_026419925.1

metadata.yaml (view) (edit on github)
species:
  short_name: bHarHar
  name: Harpia harpyja
  taxon_id: 202280
  common_name: Harpy eagle
  order:
    name: Falconiformes
  family:
    name: Accipitridae
  individuals:
    - short_name: bHarHar1
      provider: Tomas Hrbek, Guilherme Oliveira
  genome_size: 1200000000
  genome_size_method:
  project: [ vgp ]
CC BY 2.0 Jitze Couperus (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) bHarHar1 609.84 Gbp 508.20x 1.1 TiB
PacBio HiFi (.bam) bHarHar1 37.69 Gbp 31.41x 31.3 GiB
Bionano bHarHar1 N/A 707.27x 1.9 GiB
Arima bHarHar1 188.44 Gbp 157.04x 88.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.20 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bHarHar1 PacBio HiFi (subreads) 609.84 Gbp 508.20x 1.1 TiB
PacBio HiFi (.bam) 37.69 Gbp 31.41x 31.3 GiB
Bionano N/A 707.27x 1.9 GiB
Arima 188.44 Gbp 157.04x 88.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.20 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 3 February 2022
bHarHar1.pri.cur.20220203.fasta.gz (375.9 MiB)

Quality: 0.8 errors/Mb (QV=60.97)

Contigs Scaffolds
NG LG Len LG Len
10 2 37.51 Mbp 1 109.61 Mbp
20 5 31.85 Mbp 2 90.87 Mbp
30 9 27.19 Mbp 3 86.87 Mbp
40 14 22.46 Mbp 4 83.80 Mbp
50 20 18.31 Mbp 6 71.00 Mbp
60 27 16.32 Mbp 8 53.30 Mbp
70 36 13.42 Mbp 10 47.19 Mbp
80 45 11.63 Mbp 13 45.16 Mbp
90 60 6.13 Mbp 16 34.17 Mbp
100 91 1.85 Mbp 20 24.56 Mbp
1.124x 664 1.35 Gbp 322 1.35 Gbp
NG based on genome size 1.20 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 3 February 2022
bHarHar1.alt.cur.20220203.fasta.gz (336.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 39 2.32 Mbp 39 2.32 Mbp
20 103 1.61 Mbp 103 1.61 Mbp
30 188 1.24 Mbp 188 1.24 Mbp
40 298 0.96 Mbp 298 0.96 Mbp
50 442 0.72 Mbp 442 0.72 Mbp
60 641 0.50 Mbp 641 0.50 Mbp
70 935 318.14 Kbp 935 318.14 Kbp
80 1462 157.68 Kbp 1462 157.68 Kbp
90 2826 53.94 Kbp 2825 53.99 Kbp
100 0 0
0.988x 5969 1.19 Gbp 5968 1.19 Gbp
NG based on genome size 1.20 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.