Hipposideros larvatus

intermediate roundleaf bat

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mHipLar
  name: Hipposideros larvatus
  taxon_id: 175524
  common_name: intermediate roundleaf bat
  order:
    name: Chiroptera
  family:
    name: Hipposideridae
  individuals:
    - short_name: mHipLar1
      provider: Jianguo Lu
      sex: male
  genome_size: 2900000000
  genome_size_method:
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mHipLar1 89.00 Gbp 30.69x 75.4 GiB
Bionano mHipLar1 N/A 1053.15x 14.7 GiB
Arima mHipLar1 189.86 Gbp 65.47x 85.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.90 Gbp.
Last upload on 23 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mHipLar1 PacBio CLR 89.00 Gbp 30.69x 75.4 GiB
Bionano N/A 1053.15x 14.7 GiB
Arima 189.86 Gbp 65.47x 85.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.90 Gbp.
Last upload on 23 August 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 20 September 2021
mHipLar1.pri.cur.20210920.fasta.gz (651.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 4 66.33 Mbp 2 230.78 Mbp
20 9 55.07 Mbp 3 220.06 Mbp
30 15 40.91 Mbp 4 200.44 Mbp
40 22 34.75 Mbp 6 185.55 Mbp
50 31 28.88 Mbp 8 145.75 Mbp
60 43 20.65 Mbp 10 111.27 Mbp
70 61 12.58 Mbp 13 79.35 Mbp
80 120 1.42 Mbp 21 3.07 Mbp
90 0 0
100 0 0
0.807x 188 2.34 Gbp 69 2.34 Gbp
NG based on genome size 2.90 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 20 September 2021
mHipLar1.alt.cur.20210920.fasta.gz (636.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 125 1.74 Mbp 124 1.74 Mbp
20 322 1.26 Mbp 320 1.26 Mbp
30 585 0.97 Mbp 584 0.97 Mbp
40 930 0.73 Mbp 928 0.73 Mbp
50 1395 0.53 Mbp 1392 0.53 Mbp
60 2050 359.97 Kbp 2047 360.26 Kbp
70 3168 166.28 Kbp 3164 166.28 Kbp
80 0 0
90 0 0
100 0 0
0.774x 7531 2.24 Gbp 7527 2.24 Gbp
NG based on genome size 2.90 Gbp.
Assembly Metadata
assembly_vgp_2.0/mRhiSin1.yaml (view)
species: Rhinolophus_sinicus
specimen: mRhiSin1
projects:
  - vgp
primary: s3://genomeark/species/Rhinolophus_sinicus/mRhiSin1/assembly_vgp_2.0/mRhiSin1.pri.asm.20210801.fasta.gz
haplotigs: s3://genomeark/species/Rhinolophus_sinicus/mRhiSin1/assembly_vgp_2.0/mRhiSin1.alt.asm.20210801.fasta.gz
hic_bam: s3://genomeark/species/Rhinolophus_sinicus/mRhiSin1/assembly_vgp_2.0/evaluation/pretext/s2/mRhiSin1_s2.bam
pretext: s3://genomeark/species/Rhinolophus_sinicus/mRhiSin1/assembly_vgp_2.0/evaluation/pretext/s2/mRhiSin1_s2.pretext
kmer_spectra_img: s3://genomeark/species/Rhinolophus_sinicus/mRhiSin1/assembly_vgp_2.0/evaluation/merqury/p1q2_hifi/p1q2.hifi.spectra-cn.fl.png
pipeline:
  - hifiasm (0.12-r304)
  - purge_dups (1.2.5)
  - bionano_solve (Solve3.6.1_11162020)
  - salsa (v2.2)
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.