Hirundo rustica

barn swallow

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank bHirRus1: GCA_015227805.3 bHirRus1: GCA_015227815.3
ENA bHirRus1: GCA_015227805.3 bHirRus1: GCA_015227815.3
UCSC Genome Browser bHirRus1: GCA_015227805.3 bHirRus1: GCA_015227815.3

metadata.yaml (view) (edit on github)
species:
  common_name: barn swallow
  family:
    name: Hirundinidae
  genome_size: 1310000000
  genome_size_method: null
  individuals:
  - short_name: bHirRus1
  name: Hirundo rustica
  order:
    name: Passeriformes
  short_name: bHirRus
  taxon_id: 43150
  project: [ vgp ]
CC BY-SA 2.0 Mike Pennington (geograph)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR bHirRus1 67.04 Gbp 51.17x 118.0 GiB
10x bHirRus1 109.59 Gbp 83.66x 55.8 GiB
Arima bHirRus1 81.85 Gbp 62.48x 46.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.31 Gbp.
Last upload on 22 February 2020.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bHirRus1 PacBio CLR 67.04 Gbp 51.17x 118.0 GiB
10x 109.59 Gbp 83.66x 55.8 GiB
Arima 81.85 Gbp 62.48x 46.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.31 Gbp.
Last upload on 22 February 2020.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 20 August 2021
bHirRus1.pri.cur.20210820.fasta.gz (314.6 MiB)

Quality: 42.4 errors/Mb (QV=43.73)

Contigs Scaffolds
NG LG Len LG Len
10 10 8.90 Mbp 0 156.04 Mbp
20 28 6.24 Mbp 1 119.02 Mbp
30 55 4.02 Mbp 3 90.13 Mbp
40 94 2.89 Mbp 4 76.19 Mbp
50 147 2.02 Mbp 6 63.26 Mbp
60 228 1.29 Mbp 9 31.70 Mbp
70 375 0.61 Mbp 14 20.27 Mbp
80 814 111.01 Kbp 25 6.84 Mbp
90 0 0
100 0 0
0.825x 1719 1.08 Gbp 617 1.11 Gbp
NG based on genome size 1.31 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 3 October 2021
bHirRus1.alt.cur.20211003.fasta.gz (255.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 34 2.84 Mbp 34 2.84 Mbp
20 93 1.78 Mbp 93 1.78 Mbp
30 183 1.19 Mbp 183 1.19 Mbp
40 312 0.84 Mbp 312 0.84 Mbp
50 507 0.54 Mbp 507 0.54 Mbp
60 838 280.63 Kbp 838 280.63 Kbp
70 1851 52.09 Kbp 1850 52.42 Kbp
80 0 0
90 0 0
100 0 0
0.715x 2482 0.94 Gbp 2476 0.94 Gbp
NG based on genome size 1.31 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.