Hoolock leuconedys

eastern hoolock gibbon

Included in the T2T.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mHooLeu
  name: Hoolock leuconedys
  common_name: eastern hoolock gibbon
  taxon_id: 593543
  order:
    name: Primates
  family:
    name: Hominidae
  individuals:
  -
      short_name: mHooLeu1
      name: Arthur
      biosample_id: SAMN33424221
      strain: null
      alt_ids:
      - Arthur_HLE
      - HLE304
      sex: male
      description: null
      provider: Lucia Carbone (Oregon Health & Science University)
      mother: null
      father: null
      samples:
      -
         sample_id: mHooLeu1.LCL1
         tissue: lymphoblastoid cell line
         dev_stage: adult
         sample_biosample_id: null
  -
      short_name: mHooLeu2
      name: Betty
      biosample_id: null
      strain: null
      alt_ids:
      - Betty_HLE
      sex: female
      description: null
      provider: Lucia Carbone (Oregon Health & Science University)
      mother: null
      father: null
      samples:
      -
         sample_id: mHooLeu2.LCL1
         tissue: lymphoblastoid cell line
         dev_stage: adult
         sample_biosample_id: SAMN12702557
         provider: Lucia Carbone (Oregon Health & Science University)
         description: The LCL cell line was generated by Lucia Carbone at OHSU. The blood for the generation of the cell line was provided by the Gibbon Conservation Center.
  genome_size: 3230000000
  genome_size_method: GoaT ancestral inferred
  project: [ t2t ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) mHooLeu1 4619.95 Gbp 1430.32x 8.1 TiB
PacBio HiFi (.fq) mHooLeu1 242.17 Gbp 74.98x 176.2 GiB
mHooLeu2 51.61 Gbp 15.98x 33.9 GiB
PacBio HiFi (.bam) mHooLeu1 635.29 Gbp 196.68x 2.2 TiB
mHooLeu2 102.60 Gbp 31.76x 334.8 GiB
Oxford Nanopore Simplex mHooLeu1 534.08 Gbp 165.35x 424.0 GiB
mHooLeu2 392.63 Gbp 121.56x 196.4 GiB
Dovetail Genomics mHooLeu1 144.60 Gbp 44.77x 84.7 GiB
mHooLeu2 87.15 Gbp 26.98x 42.1 GiB
Illumina mHooLeu1 491.26 Gbp 152.09x 226.4 GiB
mHooLeu2 172.59 Gbp 53.43x 84.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.23 Gbp.
Last upload on 3 September 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mHooLeu1 PacBio HiFi (subreads) 4619.95 Gbp 1430.32x 8.1 TiB
PacBio HiFi (.fq) 242.17 Gbp 74.98x 176.2 GiB
PacBio HiFi (.bam) 635.29 Gbp 196.68x 2.2 TiB
Oxford Nanopore Simplex 534.08 Gbp 165.35x 424.0 GiB
Dovetail Genomics 144.60 Gbp 44.77x 84.7 GiB
Illumina 491.26 Gbp 152.09x 226.4 GiB
mHooLeu2 PacBio HiFi (.fq) 51.61 Gbp 15.98x 33.9 GiB
PacBio HiFi (.bam) 102.60 Gbp 31.76x 334.8 GiB
Oxford Nanopore Simplex 392.63 Gbp 121.56x 196.4 GiB
Dovetail Genomics 87.15 Gbp 26.98x 42.1 GiB
Illumina 172.59 Gbp 53.43x 84.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.23 Gbp.
Last upload on 3 September 2025.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 16 June 2026
mHooLeu1.pri.20260616.fasta.gz (765.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 205.78 Mbp 2 209.75 Mbp
20 4 177.03 Mbp 3 205.78 Mbp
30 6 172.94 Mbp 5 184.48 Mbp
40 8 163.02 Mbp 7 172.94 Mbp
50 10 131.21 Mbp 9 163.02 Mbp
60 12 121.96 Mbp 11 131.21 Mbp
70 15 111.60 Mbp 14 120.09 Mbp
80 18 91.69 Mbp 17 105.59 Mbp
90 0 0
100 0 0
0.886x 26 2.86 Gbp 22 2.86 Gbp
NG based on genome size 3.23 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 16 June 2026
mHooLeu1.alt.cur.20260616.fasta.gz (724.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 185.98 Mbp 2 209.89 Mbp
20 4 174.31 Mbp 3 206.00 Mbp
30 6 165.84 Mbp 5 185.98 Mbp
40 8 125.57 Mbp 7 173.30 Mbp
50 11 117.34 Mbp 9 161.80 Mbp
60 14 105.86 Mbp 11 125.57 Mbp
70 17 89.14 Mbp 14 112.23 Mbp
80 21 71.48 Mbp 17 90.74 Mbp
90 0 0
100 0 0
0.840x 33 2.71 Gbp 25 2.71 Gbp
NG based on genome size 3.23 Gbp.
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 16 June 2026
mHooLeu1.hap1.cur.20260616.fasta.gz (788.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 205.78 Mbp 2 209.75 Mbp
20 4 177.03 Mbp 3 205.78 Mbp
30 6 172.94 Mbp 5 184.48 Mbp
40 8 163.02 Mbp 7 172.94 Mbp
50 10 125.60 Mbp 9 163.02 Mbp
60 12 120.25 Mbp 11 125.60 Mbp
70 15 105.59 Mbp 14 111.66 Mbp
80 19 71.48 Mbp 17 90.74 Mbp
90 0 0
100 0 0
0.844x 31 2.73 Gbp 26 2.73 Gbp
NG based on genome size 3.23 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 16 June 2026
mHooLeu1.hap2.cur.20260616.fasta.gz (826.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 185.98 Mbp 2 209.89 Mbp
20 4 174.91 Mbp 3 206.00 Mbp
30 6 163.75 Mbp 5 185.98 Mbp
40 8 132.48 Mbp 7 173.30 Mbp
50 11 119.39 Mbp 9 161.80 Mbp
60 13 112.23 Mbp 11 132.48 Mbp
70 16 105.86 Mbp 14 119.54 Mbp
80 20 88.65 Mbp 17 105.86 Mbp
90 0 0
100 0 0
0.882x 31 2.85 Gbp 24 2.85 Gbp
NG based on genome size 3.23 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_curated from 16 June 2026
mHooLeu1.MT.cur.20260616.fasta.gz (5.3 KiB)

Quality: not computed
Individual 2 Primary Assembly
Version assembly_curated from 1 May 2026
mHooLeu2.pri.20260501.fasta.gz (768.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 205.56 Mbp 2 208.52 Mbp
20 4 184.97 Mbp 3 205.56 Mbp
30 5 175.64 Mbp 5 184.97 Mbp
40 7 165.40 Mbp 7 172.93 Mbp
50 10 130.92 Mbp 9 162.26 Mbp
60 12 123.85 Mbp 11 130.92 Mbp
70 15 106.95 Mbp 14 123.85 Mbp
80 18 87.72 Mbp 17 106.95 Mbp
90 0 0
100 0 0
0.888x 25 2.87 Gbp 21 2.87 Gbp
NG based on genome size 3.23 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 1 May 2026
mHooLeu2.alt.cur.20260501.fasta.gz (765.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 205.77 Mbp 2 209.20 Mbp
20 4 184.52 Mbp 3 205.77 Mbp
30 6 163.32 Mbp 5 184.52 Mbp
40 8 143.33 Mbp 7 172.49 Mbp
50 10 123.79 Mbp 9 161.07 Mbp
60 13 107.15 Mbp 11 129.15 Mbp
70 16 87.96 Mbp 14 123.79 Mbp
80 20 64.42 Mbp 17 107.15 Mbp
90 0 0
100 0 0
0.884x 27 2.85 Gbp 20 2.86 Gbp
NG based on genome size 3.23 Gbp.
Individual 2 Haplotype 1 Assembly
Version assembly_curated from 1 May 2026
mHooLeu2.hap1.cur.20260501.fasta.gz (829.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 205.56 Mbp 2 208.52 Mbp
20 4 184.52 Mbp 3 205.56 Mbp
30 5 175.64 Mbp 5 184.52 Mbp
40 7 165.40 Mbp 7 172.49 Mbp
50 10 130.92 Mbp 9 162.26 Mbp
60 12 112.54 Mbp 11 130.92 Mbp
70 15 90.98 Mbp 14 123.85 Mbp
80 19 68.24 Mbp 17 107.15 Mbp
90 0 0
100 0 0
0.884x 28 2.85 Gbp 22 2.85 Gbp
NG based on genome size 3.23 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_curated from 1 May 2026
mHooLeu2.hap2.cur.20260501.fasta.gz (832.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 205.77 Mbp 2 209.20 Mbp
20 4 184.97 Mbp 3 205.77 Mbp
30 6 163.32 Mbp 5 184.97 Mbp
40 8 143.21 Mbp 7 172.93 Mbp
50 10 129.15 Mbp 9 161.07 Mbp
60 13 112.36 Mbp 11 129.51 Mbp
70 16 96.55 Mbp 14 123.79 Mbp
80 19 82.69 Mbp 17 106.95 Mbp
90 0 0
100 0 0
0.888x 28 2.87 Gbp 22 2.87 Gbp
NG based on genome size 3.23 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_curated from 1 May 2026
mHooLeu2.MT.cur.20260501.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.