Hylobates_pileatus

Hylobates pileatus

Pileated Gibbon

Included in the T2T.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -

metadata.yaml (view) (edit on github)
species: short_name: mHylPil name: Hylobates pileatus taxon_id: 9589 common_name: Pileated Gibbon order: name: Primates family: name: Hylobatidae individuals: - short_name: mHylPil1 name: Domino biosample_id: null alt_ids: - HP120 sex: male birth_date: null birth_location: null birth_type: null mother: null father: null description: > Domino is a male Pileated Gibbon and his genome is being sequenced as part of a T2T effort. provider: Lucia Carbone, Oregon Health & Science University samples: - sample_id: null sample_type: null tissue: null isolation_source: null age: null sample_biosample_id: null collection_date: null provider: Lucia Carbone, Oregon Health & Science University project: [ t2t ] - short_name: mHylPil2 name: Iszie biosample_id: null alt_ids: - HP185 sex: female birth_date: null birth_location: null birth_type: null mother: null father: null description: > Iszie is a female Pileated Gibbon and her genome is being sequenced as part of a T2T effort. provider: Lucia Carbone, Oregon Health & Science University samples: - sample_id: null sample_type: null tissue: null isolation_source: null age: null sample_biosample_id: null collection_date: null provider: Lucia Carbone, Oregon Health & Science University project: [ t2t ] genome_size: 3170000000 genome_size_method: Genomes on a Tree (GoaT) estimate project: [ t2t ]

species:
  short_name: mHylPil
  name: Hylobates pileatus
  taxon_id: 9589
  common_name: Pileated Gibbon
  order:
    name: Primates
  family:
    name: Hylobatidae
  individuals:
  -
    short_name: mHylPil1
    name: Domino
    biosample_id: null
    alt_ids:
    - HP120
    sex: male
    birth_date: null
    birth_location: null
    birth_type: null
    mother: null
    father: null
    description: >
      Domino is a male Pileated Gibbon and his genome is being
      sequenced as part of a T2T effort.
    provider: Lucia Carbone, Oregon Health & Science University
    samples:
    -
      sample_id: null
      sample_type: null
      tissue: null
      isolation_source: null
      age: null
      sample_biosample_id: null
      collection_date: null
      provider: Lucia Carbone, Oregon Health & Science University
    project: [ t2t ]
  -
    short_name: mHylPil2
    name: Iszie
    biosample_id: null
    alt_ids:
    - HP185
    sex: female
    birth_date: null
    birth_location: null
    birth_type: null
    mother: null
    father: null
    description: >
      Iszie is a female Pileated Gibbon and her genome is being
      sequenced as part of a T2T effort.
    provider: Lucia Carbone, Oregon Health & Science University
    samples:
    -
      sample_id: null
      sample_type: null
      tissue: null
      isolation_source: null
      age: null
      sample_biosample_id: null
      collection_date: null
      provider: Lucia Carbone, Oregon Health & Science University
    project: [ t2t ]
  genome_size: 3170000000
  genome_size_method: Genomes on a Tree (GoaT) estimate
  project: [ t2t ]

No image

Datatype	Individual	Bases	Coverage	Bytes
PacBio HiFi (.fq)	mHylPil1	37.11 Gbp	11.71x	31.1 GiB
PacBio HiFi (.fq)	mHylPil2	142.39 Gbp	44.92x	52.9 GiB
PacBio HiFi (.bam)	mHylPil1	101.74 Gbp	32.09x	341.6 GiB
PacBio HiFi (.bam)	mHylPil2	156.45 Gbp	49.35x	525.2 GiB
Oxford Nanopore Simplex	mHylPil1	336.65 Gbp	106.20x	187.6 GiB
Oxford Nanopore Simplex	mHylPil2	516.41 Gbp	162.91x	275.1 GiB
Arima	mHylPil2	317.89 Gbp	100.28x	153.2 GiB
Dovetail Genomics	mHylPil1	79.11 Gbp	24.95x	39.9 GiB
Illumina	mHylPil1	191.71 Gbp	60.48x	93.7 GiB
Illumina	mHylPil2	234.46 Gbp	73.96x	106.2 GiB

Bases and Coverage are approximate.
Coverage based on genome size 3.17 Gbp.
Last upload on 17 September 2025.

Individual	Datatype	Bases	Coverage	Bytes
mHylPil1	PacBio HiFi (.fq)	37.11 Gbp	11.71x	31.1 GiB
	PacBio HiFi (.bam)	101.74 Gbp	32.09x	341.6 GiB
	Oxford Nanopore Simplex	336.65 Gbp	106.20x	187.6 GiB
	Dovetail Genomics	79.11 Gbp	24.95x	39.9 GiB
	Illumina	191.71 Gbp	60.48x	93.7 GiB
mHylPil2	PacBio HiFi (.fq)	142.39 Gbp	44.92x	52.9 GiB
	PacBio HiFi (.bam)	156.45 Gbp	49.35x	525.2 GiB
	Oxford Nanopore Simplex	516.41 Gbp	162.91x	275.1 GiB
	Arima	317.89 Gbp	100.28x	153.2 GiB
	Illumina	234.46 Gbp	73.96x	106.2 GiB

Bases and Coverage are approximate.
Coverage based on genome size 3.17 Gbp.
Last upload on 17 September 2025.

Individual 1 Primary Assembly
Version assembly_curated from 30 April 2026
mHylPil1.pri.20260430.fasta.gz (768.7 MiB)

Quality: not computed

	Contigs		Scaffolds
NG	LG	Len	LG	Len
10	2	191.68 Mbp	2	191.68 Mbp
20	4	180.50 Mbp	4	180.50 Mbp
30	5	163.56 Mbp	5	163.56 Mbp
40	7	144.71 Mbp	7	144.71 Mbp
50	10	128.60 Mbp	10	128.60 Mbp
60	12	118.25 Mbp	12	118.25 Mbp
70	15	111.43 Mbp	15	111.43 Mbp
80	18	91.16 Mbp	18	91.16 Mbp
90	24	10.84 Mbp	23	10.84 Mbp
100	0		0
0.902x	27	2.86 Gbp	25	2.86 Gbp

NG based on genome size 3.17 Gbp.

Individual 1 Alternate Assembly
Version assembly_curated from 30 April 2026
mHylPil1.alt.cur.20260430.fasta.gz (724.9 MiB)

Quality: not computed

	Contigs		Scaffolds
NG	LG	Len	LG	Len
10	2	191.29 Mbp	2	191.29 Mbp
20	4	181.46 Mbp	4	181.46 Mbp
30	5	163.57 Mbp	5	163.57 Mbp
40	8	128.47 Mbp	7	143.03 Mbp
50	10	117.30 Mbp	10	123.53 Mbp
60	13	109.53 Mbp	13	112.09 Mbp
70	16	91.73 Mbp	15	109.53 Mbp
80	21	53.92 Mbp	19	83.47 Mbp
90	0		0
100	0		0
0.851x	31	2.70 Gbp	26	2.70 Gbp

NG based on genome size 3.17 Gbp.

Individual 1 Haplotype 1 Assembly
Version assembly_curated from 30 April 2026
mHylPil1.hap1.cur.20260430.fasta.gz (788.5 MiB)

Quality: not computed

	Contigs		Scaffolds
NG	LG	Len	LG	Len
10	2	191.29 Mbp	2	191.29 Mbp
20	4	180.50 Mbp	4	180.50 Mbp
30	5	163.56 Mbp	5	163.56 Mbp
40	8	128.60 Mbp	7	143.03 Mbp
50	10	118.25 Mbp	10	127.38 Mbp
60	13	111.43 Mbp	13	112.66 Mbp
70	16	93.72 Mbp	15	109.53 Mbp
80	20	59.55 Mbp	19	83.47 Mbp
90	0		0
100	0		0
0.856x	29	2.71 Gbp	25	2.71 Gbp

NG based on genome size 3.17 Gbp.

Individual 1 Haplotype 2 Assembly
Version assembly_curated from 30 April 2026
mHylPil1.hap2.cur.20260430.fasta.gz (827.3 MiB)

Quality: not computed

	Contigs		Scaffolds
NG	LG	Len	LG	Len
10	2	191.68 Mbp	2	191.68 Mbp
20	4	181.46 Mbp	4	181.46 Mbp
30	5	163.57 Mbp	5	163.57 Mbp
40	7	144.71 Mbp	7	144.71 Mbp
50	10	128.47 Mbp	10	128.47 Mbp
60	12	117.30 Mbp	12	117.30 Mbp
70	15	109.92 Mbp	15	111.79 Mbp
80	19	60.10 Mbp	18	91.16 Mbp
90	0		0
100	0		0
0.897x	32	2.84 Gbp	29	2.84 Gbp

NG based on genome size 3.17 Gbp.

Individual 1 Mitochondrial Assembly
Version assembly_curated from 30 April 2026
mHylPil1.MT.cur.20260430.fasta.gz (5.3 KiB)

Quality: not computed

Individual 2 Primary Assembly
Version assembly_curated from 30 April 2026
mHylPil2.pri.20260430.fasta.gz (764.4 MiB)

Quality: not computed

	Contigs		Scaffolds
NG	LG	Len	LG	Len
10	2	191.71 Mbp	2	191.71 Mbp
20	4	180.52 Mbp	4	180.52 Mbp
30	5	163.59 Mbp	5	163.59 Mbp
40	7	144.17 Mbp	7	144.17 Mbp
50	10	128.50 Mbp	10	128.50 Mbp
60	12	118.19 Mbp	12	118.19 Mbp
70	15	109.57 Mbp	15	112.11 Mbp
80	19	60.68 Mbp	18	91.48 Mbp
90	0		0
100	0		0
0.896x	27	2.84 Gbp	24	2.84 Gbp

NG based on genome size 3.17 Gbp.

Individual 2 Alternate Assembly
Version assembly_curated from 30 April 2026
mHylPil2.alt.cur.20260430.fasta.gz (763.9 MiB)

Quality: not computed

	Contigs		Scaffolds
NG	LG	Len	LG	Len
10	2	191.33 Mbp	2	191.33 Mbp
20	4	180.38 Mbp	4	180.38 Mbp
30	5	162.91 Mbp	5	162.91 Mbp
40	7	144.71 Mbp	7	144.71 Mbp
50	10	128.73 Mbp	10	128.73 Mbp
60	12	118.41 Mbp	12	118.41 Mbp
70	15	110.80 Mbp	15	111.69 Mbp
80	19	60.61 Mbp	18	91.16 Mbp
90	0		0
100	0		0
0.896x	36	2.84 Gbp	33	2.84 Gbp

NG based on genome size 3.17 Gbp.

Individual 2 Haplotype 1 Assembly
Version assembly_curated from 30 April 2026
mHylPil2.hap1.cur.20260430.fasta.gz (826.7 MiB)

Quality: not computed

	Contigs		Scaffolds
NG	LG	Len	LG	Len
10	2	191.71 Mbp	2	191.71 Mbp
20	4	180.52 Mbp	4	180.52 Mbp
30	5	162.91 Mbp	5	162.91 Mbp
40	7	144.71 Mbp	7	144.71 Mbp
50	10	128.73 Mbp	10	128.73 Mbp
60	12	118.41 Mbp	12	118.41 Mbp
70	15	109.57 Mbp	15	111.69 Mbp
80	19	60.68 Mbp	18	91.48 Mbp
90	0		0
100	0		0
0.897x	35	2.84 Gbp	32	2.84 Gbp

NG based on genome size 3.17 Gbp.

Individual 2 Haplotype 2 Assembly
Version assembly_curated from 30 April 2026
mHylPil2.hap2.cur.20260430.fasta.gz (826.2 MiB)

Quality: not computed

	Contigs		Scaffolds
NG	LG	Len	LG	Len
10	2	191.33 Mbp	2	191.33 Mbp
20	4	180.38 Mbp	4	180.38 Mbp
30	5	163.59 Mbp	5	163.59 Mbp
40	7	144.17 Mbp	7	144.17 Mbp
50	10	128.50 Mbp	10	128.50 Mbp
60	12	118.19 Mbp	12	118.19 Mbp
70	15	110.80 Mbp	15	112.11 Mbp
80	19	60.61 Mbp	18	91.16 Mbp
90	0		0
100	0		0
0.895x	31	2.84 Gbp	28	2.84 Gbp

NG based on genome size 3.17 Gbp.

Individual 2 Mitochondrial Assembly
Version assembly_curated from 30 April 2026
mHylPil2.MT.cur.20260430.fasta.gz (5.2 KiB)

Quality: not computed

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.