Hyperoplus immaculatus

greater sand-eel

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fHypImm3: GCA_949357725.1 fHypImm3: GCA_949358355.1
ENA fHypImm3: GCA_949357725.1 fHypImm3: GCA_949358355.1
UCSC Genome Browser fHypImm3: GCA_949357725.1 fHypImm3: GCA_949358355.1

metadata.yaml (view) (edit on github)
species:
  short_name: fHypImm
  name: Hyperoplus immaculatus
  taxon_id: 1484357
  common_name: greater sand-eel
  order:
    name: Uranoscopiformes
  family:
    name: Ammodytidae
  individuals:
    - short_name: fHypImm3
      biosample_id: SAMEA13854416
      sex:
  genome_size:
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fHypImm3 24.27 Gbp 30.43x 14.0 GiB
Arima fHypImm3 151.99 Gbp 190.52x 44.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.80 Gbp.
Last upload on 8 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fHypImm3 PacBio HiFi (.bam) 24.27 Gbp 30.43x 14.0 GiB
Arima 151.99 Gbp 190.52x 44.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.80 Gbp.
Last upload on 8 February 2023.
Assemblies
Individual 3 Primary Assembly
Version assembly_curated from 28 February 2023
fHypImm3.pri.cur.20230228.fasta.gz (225.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 17 3.61 Mbp 2 37.74 Mbp
20 42 2.85 Mbp 4 35.12 Mbp
30 73 2.34 Mbp 6 33.80 Mbp
40 111 1.83 Mbp 8 32.72 Mbp
50 159 1.49 Mbp 11 31.41 Mbp
60 220 1.16 Mbp 14 29.95 Mbp
70 305 0.74 Mbp 16 28.40 Mbp
80 445 411.95 Kbp 19 26.59 Mbp
90 751 153.08 Kbp 23 15.26 Mbp
100 2755 1.00 Kbp 1567 1.00 Kbp
1.000x 2756 0.80 Gbp 1568 0.80 Gbp
NG based on genome size 0.80 Gbp.
Individual 3 Alternate Assembly
Version assembly_curated from 28 February 2023
fHypImm3.alt.cur.20230228.fasta.gz (218.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 47 1.22 Mbp 47 1.22 Mbp
20 121 0.86 Mbp 121 0.86 Mbp
30 223 0.67 Mbp 223 0.67 Mbp
40 349 0.54 Mbp 349 0.54 Mbp
50 508 427.40 Kbp 508 427.40 Kbp
60 712 320.70 Kbp 712 320.70 Kbp
70 995 225.24 Kbp 995 225.24 Kbp
80 1431 135.69 Kbp 1431 135.69 Kbp
90 2261 60.29 Kbp 2261 60.29 Kbp
100 4951 3.17 Kbp 4951 3.17 Kbp
1.000x 4952 0.76 Gbp 4952 0.76 Gbp
NG based on genome size 0.80 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.