Lagenorhynchus albirostris

white-beaked dolphin

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mLagAlb1: GCA_949774975.1 mLagAlb1: GCA_949774935.1
ENA mLagAlb1: GCA_949774975.1 mLagAlb1: GCA_949774935.1
UCSC Genome Browser mLagAlb1: GCA_949774975.1 mLagAlb1: GCA_949774935.1

metadata.yaml (view) (edit on github)
species:
  short_name: mLagAlb
  name: Lagenorhynchus albirostris
  taxon_id: 27610
  common_name: white-beaked dolphin
  order:
    name: Cetacea
  family:
    name: Delphinidae
  individuals:
    - short_name: mLagAlb1
      biosample_id: SAMEA111380537
      sex: female
  genome_size: 3080700000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mLagAlb1 89.56 Gbp 29.07x 306.0 GiB
Arima mLagAlb1 524.60 Gbp 170.29x 153.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.08 Gbp.
Last upload on 9 March 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mLagAlb1 PacBio HiFi (.bam) 89.56 Gbp 29.07x 306.0 GiB
Arima 524.60 Gbp 170.29x 153.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.08 Gbp.
Last upload on 9 March 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 28 March 2023
mLagAlb1.pri.cur.20230328.fasta.gz (704.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 33 7.10 Mbp 1 186.27 Mbp
20 82 5.57 Mbp 3 148.38 Mbp
30 146 4.23 Mbp 5 132.31 Mbp
40 224 3.57 Mbp 8 110.72 Mbp
50 323 2.74 Mbp 11 103.95 Mbp
60 455 2.00 Mbp 14 88.54 Mbp
70 648 1.24 Mbp 17 82.34 Mbp
80 1032 434.87 Kbp 63 0.94 Mbp
90 0 0
100 0 0
0.826x 1480 2.54 Gbp 410 2.54 Gbp
NG based on genome size 3.08 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 28 March 2023
mLagAlb1.alt.cur.20230328.fasta.gz (567.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 667 313.01 Kbp 667 313.01 Kbp
20 1925 199.32 Kbp 1925 199.32 Kbp
30 3817 134.77 Kbp 3817 134.77 Kbp
40 6641 89.10 Kbp 6641 89.10 Kbp
50 11052 55.27 Kbp 11052 55.27 Kbp
60 18319 33.05 Kbp 18319 33.05 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.661x 25620 2.04 Gbp 25620 2.04 Gbp
NG based on genome size 3.08 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.