Larus michahellis

yellow-legged gull

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bLarMic
  name: Larus michahellis
  taxon_id: 119627
  common_name: yellow-legged gull
  order:
    name: Charadriiformes
  family:
    name: Laridae
  individuals:
    - short_name: bLarMic1
      biosample_id: SAMEA114211328
      sex: female
  genome_size: 1432770000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bLarMic1 86.38 Gbp 60.29x 32.9 GiB
Arima bLarMic1 287.86 Gbp 200.91x 81.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.43 Gbp.
Last upload on 23 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bLarMic1 PacBio HiFi (.bam) 86.38 Gbp 60.29x 32.9 GiB
Arima 287.86 Gbp 200.91x 81.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.43 Gbp.
Last upload on 23 May 2024.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 12 July 2024
bLarMic1.pri.cur.20240712.fasta.gz (374.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 11 11.22 Mbp 1 224.38 Mbp
20 26 7.87 Mbp 2 170.44 Mbp
30 47 6.22 Mbp 3 132.37 Mbp
40 71 5.40 Mbp 4 94.79 Mbp
50 102 4.03 Mbp 6 87.29 Mbp
60 142 3.13 Mbp 7 73.96 Mbp
70 194 2.33 Mbp 10 51.87 Mbp
80 270 1.47 Mbp 15 17.39 Mbp
90 398 0.79 Mbp 39 1.75 Mbp
100 0 0
0.981x 1118 1.41 Gbp 618 1.41 Gbp
NG based on genome size 1.43 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 12 July 2024
bLarMic1.alt.cur.20240712.fasta.gz (346.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 45 2.46 Mbp 45 2.46 Mbp
20 113 1.82 Mbp 113 1.82 Mbp
30 203 1.41 Mbp 203 1.41 Mbp
40 317 1.12 Mbp 317 1.12 Mbp
50 468 0.84 Mbp 468 0.84 Mbp
60 664 0.64 Mbp 664 0.64 Mbp
70 935 430.39 Kbp 935 430.39 Kbp
80 1426 187.86 Kbp 1426 187.86 Kbp
90 0 0
100 0 0
0.899x 4674 1.29 Gbp 4674 1.29 Gbp
NG based on genome size 1.43 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 24 May 2024
bLarMic1.MT.20240524.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.