Lynx canadensis
Canada lynx
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | mLynCan4: GCA_007474595.2 | mLynCan4: GCA_007474575.2 |
ENA | mLynCan4: GCA_007474595.2 | mLynCan4: GCA_007474575.2 |
UCSC Genome Browser | mLynCan4: GCA_007474595.2 | mLynCan4: GCA_007474575.2 |
metadata.yaml (view) (edit on github) |
---|
CC BY 2.0 Keith Williams (flickr)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 2.47 Gbp.
Last upload on 16 August 2018.
Coverage based on genome size 2.47 Gbp.
Last upload on 16 August 2018.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
mLynCan4 | PacBio CLR | 179.91 Gbp | 72.79x | 311.2 GiB | |
10x | 318.35 Gbp | 128.81x | 194.7 GiB | ||
Bionano | N/A | 585.59x | 2.3 GiB | ||
Arima | 232.95 Gbp | 94.25x | 114.0 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.47 Gbp.
Last upload on 16 August 2018.
Coverage based on genome size 2.47 Gbp.
Last upload on 16 August 2018.
Assemblies
Individual 4 Primary Assembly
Version assembly_curated from 8 June 2020
mLynCan4.pri.cur.20200608.fasta.gz (700.1 MiB)
Quality: 235.6 errors/Mb (QV=36.28)
Version assembly_curated from 8 June 2020
mLynCan4.pri.cur.20200608.fasta.gz (700.1 MiB)
Quality: 235.6 errors/Mb (QV=36.28)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 9 | 23.42 Mbp | 1 | 220.95 Mbp |
20 | 23 | 14.91 Mbp | 2 | 205.93 Mbp |
30 | 42 | 11.68 Mbp | 3 | 168.99 Mbp |
40 | 66 | 9.13 Mbp | 4 | 158.93 Mbp |
50 | 97 | 7.41 Mbp | 6 | 147.28 Mbp |
60 | 136 | 5.66 Mbp | 8 | 139.83 Mbp |
70 | 188 | 3.86 Mbp | 10 | 115.72 Mbp |
80 | 270 | 2.37 Mbp | 12 | 93.55 Mbp |
90 | 421 | 1.10 Mbp | 15 | 69.07 Mbp |
100 | 0 | 0 | ||
0.973x | 896 | 2.41 Gbp | 54 | 2.41 Gbp |
NG based on genome size 2.47 Gbp.
Individual 4 Alternate Assembly
Version assembly_curated from 3 April 2020
mLynCan4.alt.cur.20200403.fasta.gz (425.0 MiB)
Quality: not computed
Version assembly_curated from 3 April 2020
mLynCan4.alt.cur.20200403.fasta.gz (425.0 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 596 | 292.78 Kbp | 596 | 292.78 Kbp |
20 | 1679 | 186.71 Kbp | 1679 | 186.71 Kbp |
30 | 3328 | 123.20 Kbp | 3327 | 123.27 Kbp |
40 | 5802 | 82.03 Kbp | 5801 | 82.06 Kbp |
50 | 9660 | 50.00 Kbp | 9657 | 50.01 Kbp |
60 | 0 | 0 | ||
70 | 0 | 0 | ||
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.573x | 15046 | 1.42 Gbp | 15041 | 1.42 Gbp |
NG based on genome size 2.47 Gbp.
Individual 4 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
mLynCan4.MT.20191003.fasta.gz (5.0 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 3 October 2019
mLynCan4.MT.20191003.fasta.gz (5.0 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.