Meles meles

European badger

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Maternal Assembly Paternal Assembly
GenBank mMelMel3: GCA_922990625.1 mMelMel3: GCA_922984935.2
ENA mMelMel3: GCA_922990625.1 mMelMel3: GCA_922984935.2
UCSC Genome Browser mMelMel3: GCA_922990625.1 mMelMel3: GCA_922984935.2

metadata.yaml (view) (edit on github)
species:
  short_name: mMelMel
  name: Meles meles
  taxon_id: 9662
  common_name: European badger
  order:
    name: Carnivora
  family:
    name: Mustelidae
  individuals:
    - short_name: mMelMel1
      biosample_id: SAMEA5962962
      sex: male
    - short_name: mMelMel2
      biosample_id: SAMEA5962963
      sex: female
    - short_name: mMelMel3
      biosample_id: SAMEA5962964
      sex: male
      father: mMelMel1
      mother: mMelMel2
  genome_size: 2802245436
  genome_size_method: genomescope (k=31)
  project: [ vgp ]
CC BY-SA 3.0 kallerna (wikipedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mMelMel3 110.09 Gbp 39.29x 101.3 GiB
10x mMelMel3 131.47 Gbp 46.92x 81.1 GiB
Bionano mMelMel3 N/A 795.01x 3.1 GiB
Arima mMelMel3 364.74 Gbp 130.16x 181.2 GiB
Illumina mMelMel1 117.38 Gbp 41.89x 80.7 GiB
mMelMel2 114.43 Gbp 40.83x 77.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.80 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMelMel1 Illumina 117.38 Gbp 41.89x 80.7 GiB
mMelMel2 Illumina 114.43 Gbp 40.83x 77.1 GiB
mMelMel3 PacBio HiFi (.bam) 110.09 Gbp 39.29x 101.3 GiB
10x 131.47 Gbp 46.92x 81.1 GiB
Bionano N/A 795.01x 3.1 GiB
Arima 364.74 Gbp 130.16x 181.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.80 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 3 Merged Trio Assembly
Version assembly_curated from 10 December 2021
mMelMel3.pat.X.cur.20211210.fasta.gz (780.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 1 151.14 Mbp 1 210.73 Mbp
20 3 126.20 Mbp 2 184.30 Mbp
30 5 118.71 Mbp 4 158.03 Mbp
40 8 87.85 Mbp 6 151.14 Mbp
50 12 70.61 Mbp 8 120.13 Mbp
60 16 49.81 Mbp 10 109.97 Mbp
70 23 31.94 Mbp 13 87.85 Mbp
80 33 21.11 Mbp 16 82.95 Mbp
90 59 4.06 Mbp 21 45.12 Mbp
100 0 0
0.977x 638 2.74 Gbp 537 2.74 Gbp
NG based on genome size 2.80 Gbp.
Individual 3 Maternal Assembly
Version assembly_curated from 10 December 2021
mMelMel3.mat.decon.20211210.fasta.gz (768.1 MiB)

Quality: 21.2 errors/Mb (QV=46.73)

Contigs Scaffolds
NG LG Len LG Len
10 1 149.31 Mbp 1 189.37 Mbp
20 4 123.64 Mbp 2 166.87 Mbp
30 6 85.00 Mbp 4 150.67 Mbp
40 9 77.68 Mbp 6 123.64 Mbp
50 13 65.75 Mbp 9 113.45 Mbp
60 19 42.76 Mbp 12 79.85 Mbp
70 26 36.79 Mbp 15 70.66 Mbp
80 35 26.47 Mbp 20 48.20 Mbp
90 60 2.90 Mbp 39 3.79 Mbp
100 0 0
0.961x 753 2.69 Gbp 726 2.69 Gbp
NG based on genome size 2.80 Gbp.
Individual 3 Paternal Assembly
No assembly available.


Contigs Scaffolds
NG LG Len LG Len
10 - - - -
20 - - - -
30 - - - -
40 - - - -
50 - - - -
60 - - - -
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.000x - 0.0 Mbp - 0.0 Mbp
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.