Mesoplodon mirus

True's beaked whale

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mMesMir
  name: Mesoplodon mirus
  taxon_id: 52113
  common_name: True's beaked whale
  order:
    name: Cetacea
  family:
    name: Hyperoodontidae
  individuals:
    - short_name: mMesMir1
      biosample_id: SAMEA115358965
      sex: female
  genome_size: 3217620000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mMesMir1 156.15 Gbp 48.53x 49.6 GiB
Arima mMesMir1 319.41 Gbp 99.27x 77.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.22 Gbp.
Last upload on 15 August 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMesMir1 PacBio HiFi (.bam) 156.15 Gbp 48.53x 49.6 GiB
Arima 319.41 Gbp 99.27x 77.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 3.22 Gbp.
Last upload on 15 August 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 23 November 2024
mMesMir1.hap1.cur.20241123.fasta.gz (862.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 33 8.24 Mbp 2 231.52 Mbp
20 76 6.66 Mbp 3 200.35 Mbp
30 130 5.37 Mbp 5 187.08 Mbp
40 197 4.38 Mbp 7 147.74 Mbp
50 277 3.59 Mbp 9 130.92 Mbp
60 378 2.83 Mbp 12 110.79 Mbp
70 512 2.11 Mbp 16 87.27 Mbp
80 693 1.49 Mbp 20 65.93 Mbp
90 968 0.92 Mbp 71 2.80 Mbp
100 1495 363.70 Kbp 362 0.50 Mbp
1.070x 3997 3.44 Gbp 2757 3.44 Gbp
NG based on genome size 3.22 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 23 November 2024
mMesMir1.hap2.cur.20241123.fasta.gz (784.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 33 7.85 Mbp 2 189.40 Mbp
20 79 6.40 Mbp 4 185.36 Mbp
30 136 4.96 Mbp 6 145.34 Mbp
40 211 3.96 Mbp 8 115.80 Mbp
50 302 3.07 Mbp 11 107.05 Mbp
60 427 2.24 Mbp 14 93.81 Mbp
70 596 1.59 Mbp 18 77.08 Mbp
80 861 0.89 Mbp 40 3.73 Mbp
90 1622 168.14 Kbp 574 177.63 Kbp
100 0 0
0.919x 2457 2.96 Gbp 1384 2.96 Gbp
NG based on genome size 3.22 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 19 August 2024
mMesMir1.MT.20240819.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.