Mesoplodon mirus
True's beaked whale
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | mMesMir1 | 156.15 Gbp | 48.53x | 49.6 GiB | |
Arima | mMesMir1 | 319.41 Gbp | 99.27x | 77.1 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 3.22 Gbp.
Last upload on 15 August 2024.
Coverage based on genome size 3.22 Gbp.
Last upload on 15 August 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
mMesMir1 | PacBio HiFi (.bam) | 156.15 Gbp | 48.53x | 49.6 GiB | |
Arima | 319.41 Gbp | 99.27x | 77.1 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 3.22 Gbp.
Last upload on 15 August 2024.
Coverage based on genome size 3.22 Gbp.
Last upload on 15 August 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 23 November 2024
mMesMir1.hap1.cur.20241123.fasta.gz (862.9 MiB)
Quality: not computed
Version assembly_curated from 23 November 2024
mMesMir1.hap1.cur.20241123.fasta.gz (862.9 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 33 | 8.24 Mbp | 2 | 231.52 Mbp |
20 | 76 | 6.66 Mbp | 3 | 200.35 Mbp |
30 | 130 | 5.37 Mbp | 5 | 187.08 Mbp |
40 | 197 | 4.38 Mbp | 7 | 147.74 Mbp |
50 | 277 | 3.59 Mbp | 9 | 130.92 Mbp |
60 | 378 | 2.83 Mbp | 12 | 110.79 Mbp |
70 | 512 | 2.11 Mbp | 16 | 87.27 Mbp |
80 | 693 | 1.49 Mbp | 20 | 65.93 Mbp |
90 | 968 | 0.92 Mbp | 71 | 2.80 Mbp |
100 | 1495 | 363.70 Kbp | 362 | 0.50 Mbp |
1.070x | 3997 | 3.44 Gbp | 2757 | 3.44 Gbp |
NG based on genome size 3.22 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 23 November 2024
mMesMir1.hap2.cur.20241123.fasta.gz (784.2 MiB)
Quality: not computed
Version assembly_curated from 23 November 2024
mMesMir1.hap2.cur.20241123.fasta.gz (784.2 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 33 | 7.85 Mbp | 2 | 189.40 Mbp |
20 | 79 | 6.40 Mbp | 4 | 185.36 Mbp |
30 | 136 | 4.96 Mbp | 6 | 145.34 Mbp |
40 | 211 | 3.96 Mbp | 8 | 115.80 Mbp |
50 | 302 | 3.07 Mbp | 11 | 107.05 Mbp |
60 | 427 | 2.24 Mbp | 14 | 93.81 Mbp |
70 | 596 | 1.59 Mbp | 18 | 77.08 Mbp |
80 | 861 | 0.89 Mbp | 40 | 3.73 Mbp |
90 | 1622 | 168.14 Kbp | 574 | 177.63 Kbp |
100 | 0 | 0 | ||
0.919x | 2457 | 2.96 Gbp | 1384 | 2.96 Gbp |
NG based on genome size 3.22 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 19 August 2024
mMesMir1.MT.20240819.fasta.gz (5.2 KiB)
Quality: not computed
Version assembly_MT_cambridge from 19 August 2024
mMesMir1.MT.20240819.fasta.gz (5.2 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.