Mustela lutreola

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (subreads) mMusLut2 2290.09 Gbp 885.48x 3.9 TiB
PacBio HiFi (.fq) mMusLut2 93.49 Gbp 36.15x 72.8 GiB
PacBio HiFi (.bam) mMusLut2 293.82 Gbp 113.61x 1.0 TiB
Dovetail Genomics mMusLut3 172.89 Gbp 66.85x 88.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.59 Gbp.
Last upload on 14 June 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mMusLut2 PacBio HiFi (subreads) 2290.09 Gbp 885.48x 3.9 TiB
PacBio HiFi (.fq) 93.49 Gbp 36.15x 72.8 GiB
PacBio HiFi (.bam) 293.82 Gbp 113.61x 1.0 TiB
mMusLut3 Dovetail Genomics 172.89 Gbp 66.85x 88.6 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.59 Gbp.
Last upload on 14 June 2024.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 8 June 2023
mMusLut2.pri.cur.20230608.fasta.gz (740.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 161.66 Mbp 1 290.10 Mbp
20 4 146.10 Mbp 3 211.29 Mbp
30 6 117.74 Mbp 4 202.57 Mbp
40 8 94.97 Mbp 5 177.47 Mbp
50 11 83.36 Mbp 7 154.08 Mbp
60 14 72.93 Mbp 8 151.51 Mbp
70 18 63.47 Mbp 10 133.08 Mbp
80 23 42.37 Mbp 12 104.55 Mbp
90 31 25.02 Mbp 15 75.87 Mbp
100 64 38.84 Kbp 25 38.84 Kbp
1.000x 64 2.59 Gbp 25 2.59 Gbp
NG based on genome size 2.59 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 8 June 2023
mMusLut2.alt.cur.20230608.fasta.gz (515.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 137 0.79 Mbp 137 0.79 Mbp
20 417 0.53 Mbp 417 0.53 Mbp
30 811 398.20 Kbp 811 398.20 Kbp
40 1321 311.74 Kbp 1321 311.74 Kbp
50 1968 245.42 Kbp 1968 245.42 Kbp
60 2788 193.83 Kbp 2788 193.83 Kbp
70 3841 148.62 Kbp 3841 148.62 Kbp
80 5262 105.12 Kbp 5262 105.12 Kbp
90 7424 64.08 Kbp 7424 64.08 Kbp
100 12043 10.04 Kbp 12043 10.04 Kbp
1.000x 12043 1.79 Gbp 12043 1.79 Gbp
NG based on genome size 2.59 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_rockefeller from 21 March 2023
mMusLut2.MT.20230321.fasta.gz (4.9 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_standard_2.0/mMusLut2.yml (view)
species: Mustela lutreola
specimen: mMusLut2
projects: 
  - vgp
data_location: S3
release_to: S3
primary: s3://genomeark/species/Mustela_lutreola/mMusLut2/assembly_vgp_standard_2.0/mMusLut2.standard.pri.20230320.fasta.gz
haplotigs: s3://genomeark/species/Mustela_lutreola/mMusLut2/assembly_vgp_standard_2.0/mMusLut2.standard.alt.20230320.fasta.gz
pretext: s3://genomeark/species/Mustela_lutreola/mMusLut2/assembly_vgp_standard_2.0/evaluation/pri/pretext/mMusLut2_pri__s2.heatmap.pretext
kmer_spectra_img: s3://genomeark/species/Mustela_lutreola/mMusLut2/assembly_vgp_standard_2.0/evaluation/merqury/mMusLut2_png/
mito: s3://genomeark/species/Mustela_lutreola/mMusLut2/assembly_MT_rockefeller/mMusLut2.MT.20230321.fasta.gz
pacbio_read_dir: s3://genomeark/species/Mustela_lutreola/mMusLut2/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Mustela_lutreola/mMusLut3/genomic_data/dovetail/
pipeline:
  - hifiasm (0.18.8+galaxy1)
  - purge_dups
  - yahs (1.2a.2+galaxy0)
assembled_by_group: Rockefeller
notes: This was a primary/alternate assembly of mMusLut2 (VGL-mMusLut1). There was no bionano data. HiC scaffolding was performed with yahs. The HiC prep was Arima kit 2. HiC data was generated from a different individual (ToLID: mMusLut3, internal ID VGL-mMusLut2). Both individuals are indicated as male in the metadata. 
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.