Nansenia antarctica

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fNanAnt
  name: Nansenia antarctica
  taxon_id: 443705
  common_name:
  order:
    name: Argentiniformes
  family:
    name: Microstomatidae
  individuals:
    - short_name: fNanAnt1
      biosample_id: SAMEA8748805
      sex:
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-NC 3.0 U.N. FAO (FishBase)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fNanAnt1 63.34 Gbp 58.34x 135.5 GiB
Arima fNanAnt1 252.13 Gbp 232.21x 117.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.09 Gbp.
Last upload on 8 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fNanAnt1 PacBio HiFi (.bam) 63.34 Gbp 58.34x 135.5 GiB
Arima 252.13 Gbp 232.21x 117.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.09 Gbp.
Last upload on 8 August 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 2 May 2024
fNanAnt1.pri.cur.20240502.fasta.gz (285.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 34 2.41 Mbp 1 114.81 Mbp
20 87 1.76 Mbp 3 87.24 Mbp
30 159 1.28 Mbp 4 77.24 Mbp
40 258 0.98 Mbp 5 76.87 Mbp
50 386 0.75 Mbp 7 66.75 Mbp
60 558 0.53 Mbp 9 46.85 Mbp
70 805 365.99 Kbp 11 34.76 Mbp
80 1181 228.19 Kbp 15 31.80 Mbp
90 1860 110.09 Kbp 18 26.50 Mbp
100 4476 1.00 Kbp 1177 1.00 Kbp
1.000x 4476 1.09 Gbp 1177 1.09 Gbp
NG based on genome size 1.09 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 2 May 2024
fNanAnt1.alt.cur.20240502.fasta.gz (267.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 78 0.93 Mbp 78 0.93 Mbp
20 215 0.61 Mbp 215 0.61 Mbp
30 409 441.96 Kbp 409 441.96 Kbp
40 679 322.56 Kbp 678 323.14 Kbp
50 1043 237.18 Kbp 1042 238.27 Kbp
60 1552 167.71 Kbp 1548 168.41 Kbp
70 2278 114.85 Kbp 2268 115.86 Kbp
80 3374 73.35 Kbp 3356 73.95 Kbp
90 5175 42.67 Kbp 5148 42.82 Kbp
100 8972 2.60 Kbp 8937 2.60 Kbp
1.000x 8972 1.01 Gbp 8937 1.01 Gbp
NG based on genome size 1.09 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 3 August 2023
fNanAnt1.MT.20230803.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.