Odontesthes bonariensis
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | fOdoBon6: GCA_027942865.1 fOdoBon6: GCA_027942885.1 | |
ENA | fOdoBon6: GCA_027942865.1 fOdoBon6: GCA_027942885.1 | |
UCSC Genome Browser | fOdoBon6: GCA_027942865.1 fOdoBon6: GCA_027942885.1 |
No image
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 0.95 Gbp.
Last upload on 29 July 2025.
Coverage based on genome size 0.95 Gbp.
Last upload on 29 July 2025.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
fOdoBon6 | PacBio HiFi (subreads) | 95.22 Gbp | 100.67x | 234.7 GiB | |
PacBio HiFi (.fq) | 33.41 Gbp | 35.32x | 23.7 GiB | ||
Arima | 89.99 Gbp | 95.14x | 46.1 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 0.95 Gbp.
Last upload on 29 July 2025.
Coverage based on genome size 0.95 Gbp.
Last upload on 29 July 2025.
Assemblies
Individual 6 Primary Assembly
Version assembly_curated from 7 July 2022
fOdoBon6.pri.cur.20220707.fasta.gz (261.3 MiB)
Quality: 0.3 errors/Mb (QV=64.64)
Version assembly_curated from 7 July 2022
fOdoBon6.pri.cur.20220707.fasta.gz (261.3 MiB)
Quality: 0.3 errors/Mb (QV=64.64)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 23.88 Mbp | 1 | 46.87 Mbp |
20 | 7 | 19.95 Mbp | 4 | 42.25 Mbp |
30 | 13 | 16.07 Mbp | 6 | 40.69 Mbp |
40 | 19 | 12.96 Mbp | 8 | 40.12 Mbp |
50 | 28 | 9.83 Mbp | 11 | 39.25 Mbp |
60 | 40 | 6.46 Mbp | 13 | 38.54 Mbp |
70 | 57 | 4.96 Mbp | 15 | 38.31 Mbp |
80 | 80 | 3.29 Mbp | 18 | 35.39 Mbp |
90 | 126 | 1.35 Mbp | 21 | 33.06 Mbp |
100 | 470 | 10.92 Kbp | 188 | 10.92 Kbp |
1.000x | 471 | 0.95 Gbp | 189 | 0.95 Gbp |
NG based on genome size 0.95 Gbp.
Individual 6 Alternate Assembly
Version assembly_curated from 7 July 2022
fOdoBon6.alt.cur.20220707.fasta.gz (0.1 KiB)
Quality: not computed
Version assembly_curated from 7 July 2022
fOdoBon6.alt.cur.20220707.fasta.gz (0.1 KiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 0 | 0 | ||
20 | 0 | 0 | ||
30 | 0 | 0 | ||
40 | 0 | 0 | ||
50 | 0 | 0 | ||
60 | 0 | 0 | ||
70 | 0 | 0 | ||
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.000x | 0 | 0 |
NG based on genome size 0.95 Gbp.
Individual 6 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 7 June 2022
fOdoBon6.HiC.hap1.20220607.fasta.gz (257.0 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 7 June 2022
fOdoBon6.HiC.hap1.20220607.fasta.gz (257.0 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 23.88 Mbp | 2 | 40.16 Mbp |
20 | 7 | 19.95 Mbp | 4 | 37.98 Mbp |
30 | 13 | 16.07 Mbp | 7 | 36.05 Mbp |
40 | 19 | 12.96 Mbp | 9 | 33.35 Mbp |
50 | 28 | 9.83 Mbp | 12 | 31.77 Mbp |
60 | 40 | 6.46 Mbp | 15 | 31.39 Mbp |
70 | 57 | 4.96 Mbp | 18 | 29.87 Mbp |
80 | 80 | 3.29 Mbp | 22 | 20.46 Mbp |
90 | 126 | 1.35 Mbp | 37 | 3.80 Mbp |
100 | 469 | 10.92 Kbp | 319 | 10.92 Kbp |
1.000x | 470 | 0.95 Gbp | 320 | 0.95 Gbp |
NG based on genome size 0.95 Gbp.
Individual 6 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 7 June 2022
fOdoBon6.HiC.hap2.20220607.fasta.gz (260.8 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 7 June 2022
fOdoBon6.HiC.hap2.20220607.fasta.gz (260.8 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 24.55 Mbp | 1 | 56.20 Mbp |
20 | 7 | 21.25 Mbp | 3 | 41.14 Mbp |
30 | 12 | 19.23 Mbp | 5 | 39.35 Mbp |
40 | 18 | 14.04 Mbp | 8 | 33.62 Mbp |
50 | 27 | 8.49 Mbp | 11 | 30.59 Mbp |
60 | 40 | 6.51 Mbp | 14 | 29.63 Mbp |
70 | 57 | 4.97 Mbp | 18 | 26.00 Mbp |
80 | 84 | 2.83 Mbp | 23 | 8.05 Mbp |
90 | 135 | 1.14 Mbp | 47 | 1.96 Mbp |
100 | 468 | 13.80 Kbp | 333 | 13.80 Kbp |
1.000x | 469 | 0.97 Gbp | 334 | 0.97 Gbp |
NG based on genome size 0.95 Gbp.
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.