Oligoryzomys nigripes

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mOliNig2 180.74 Gbp N/A 82.7 GiB
PacBio HiFi (.bam) mOliNig2 179.69 Gbp N/A 584.1 GiB
Arima mOliNig2 364.96 Gbp N/A 188.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 28 March 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mOliNig2 PacBio HiFi (.fq) 180.74 Gbp N/A 82.7 GiB
PacBio HiFi (.bam) 179.69 Gbp N/A 584.1 GiB
Arima 364.96 Gbp N/A 188.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 28 March 2025.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_curated from 11 May 2026
mOliNig2.hap1.cur.20260511.fasta.gz (750.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 76.56 Mbp 1 276.89 Mbp
20 7 57.70 Mbp 3 162.37 Mbp
30 12 49.24 Mbp 4 153.44 Mbp
40 19 32.11 Mbp 7 100.59 Mbp
50 28 25.33 Mbp 9 90.49 Mbp
60 40 19.88 Mbp 13 76.48 Mbp
70 55 14.60 Mbp 16 71.93 Mbp
80 80 8.43 Mbp 20 62.90 Mbp
90 125 4.11 Mbp 25 45.33 Mbp
100 440 12.70 Kbp 130 12.70 Kbp
1.000x 440 2.63 Gbp 130 2.63 Gbp
NG based on genome size .
Individual 2 Haplotype 2 Assembly
Version assembly_curated from 11 May 2026
mOliNig2.hap2.cur.20260511.fasta.gz (658.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 4 64.06 Mbp 2 162.79 Mbp
20 8 58.55 Mbp 3 161.63 Mbp
30 12 49.20 Mbp 5 129.99 Mbp
40 18 35.64 Mbp 7 98.17 Mbp
50 27 26.74 Mbp 10 88.98 Mbp
60 37 22.32 Mbp 13 75.93 Mbp
70 51 14.77 Mbp 16 68.36 Mbp
80 70 11.35 Mbp 20 62.75 Mbp
90 102 5.01 Mbp 25 49.76 Mbp
100 374 9.76 Kbp 95 21.81 Kbp
1.000x 374 2.49 Gbp 95 2.49 Gbp
NG based on genome size .
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.