Ornithorhynchus anatinus

platypus

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mOrnAna1: GCA_004115215.4 mOrnAna1: GCA_004115175.2
ENA mOrnAna1: GCA_004115215.4 mOrnAna1: GCA_004115175.2
UCSC Genome Browser mOrnAna1: GCA_004115215.4 mOrnAna1: GCA_004115175.2

metadata.yaml (view) (edit on github)
species:
  short_name: mOrnAna
  name: Ornithorhynchus anatinus
  taxon_id: 9258
  common_name: platypus
  order:
    name: Monotremata
  family:
    name: Ornithorhynchidae
  individuals:
    - short_name: mOrnAna1
    - short_name: mOrnAna2
  genome_size: 2128226567
  genome_size_method:
  project: [ vgp ]
CC BY-NC 2.0 Trevira1 (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR mOrnAna1 138.19 Gbp 64.93x 499.6 GiB
10x mOrnAna1 359.56 Gbp 168.95x 166.6 GiB
Bionano mOrnAna1 N/A 672.40x 1.9 GiB
Dovetail Genomics mOrnAna2 44.44 Gbp 20.88x 26.7 GiB
Phase mOrnAna1 103.06 Gbp 48.43x 61.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.13 Gbp.
Last upload on 7 September 2018.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mOrnAna1 PacBio CLR 138.19 Gbp 64.93x 499.6 GiB
10x 359.56 Gbp 168.95x 166.6 GiB
Bionano N/A 672.40x 1.9 GiB
Phase 103.06 Gbp 48.43x 61.2 GiB
mOrnAna2 Dovetail Genomics 44.44 Gbp 20.88x 26.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.13 Gbp.
Last upload on 7 September 2018.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 6 December 2019
mOrnAna1.pri.cur.20191206.fasta.gz (530.0 MiB)

Quality: 91.1 errors/Mb (QV=40.40)

Contigs Scaffolds
NG LG Len LG Len
10 4 36.85 Mbp 1 171.72 Mbp
20 10 28.05 Mbp 2 141.99 Mbp
30 19 20.74 Mbp 4 125.04 Mbp
40 31 16.13 Mbp 5 110.29 Mbp
50 45 12.42 Mbp 8 70.14 Mbp
60 66 8.63 Mbp 11 60.46 Mbp
70 101 4.73 Mbp 15 46.40 Mbp
80 174 1.69 Mbp 21 30.54 Mbp
90 0 0
100 0 0
0.866x 836 1.84 Gbp 321 1.86 Gbp
NG based on genome size 2.13 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 6 December 2019
mOrnAna1.alt.cur.20191206.fasta.gz (457.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 74 2.15 Mbp 74 2.15 Mbp
20 192 1.56 Mbp 192 1.56 Mbp
30 358 1.11 Mbp 358 1.11 Mbp
40 584 0.81 Mbp 584 0.81 Mbp
50 899 0.56 Mbp 899 0.56 Mbp
60 1401 309.47 Kbp 1400 310.44 Kbp
70 2912 53.05 Kbp 2894 53.46 Kbp
80 0 0
90 0 0
100 0 0
0.740x 5868 1.58 Gbp 5843 1.58 Gbp
NG based on genome size 2.13 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_curated from 16 November 2018
mOrnAna1.pri.cur.20181116.MT.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.