Passerculus sandwichensis
Savannah sparrow
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | bPasSan1: GCA_022577445.1 | bPasSan1: GCA_022578375.1 |
ENA | bPasSan1: GCA_022577445.1 | bPasSan1: GCA_022578375.1 |
UCSC Genome Browser | bPasSan1: GCA_022577445.1 | bPasSan1: GCA_022578375.1 |
metadata.yaml (view) (edit on github) |
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CC BY-SA 3.0 Simon Pierre Barrette (Wikimedia)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 1.18 Gbp.
Last upload on 8 April 2024.
Coverage based on genome size 1.18 Gbp.
Last upload on 8 April 2024.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size 1.18 Gbp.
Last upload on 8 April 2024.
Coverage based on genome size 1.18 Gbp.
Last upload on 8 April 2024.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 27 May 2023
bPasSan2.pri.cur.20230527.fasta.gz (350.7 MiB)
Quality: not computed
Version assembly_curated from 27 May 2023
bPasSan2.pri.cur.20230527.fasta.gz (350.7 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 40.42 Mbp | 1 | 157.12 Mbp |
20 | 6 | 36.31 Mbp | 2 | 118.51 Mbp |
30 | 9 | 30.40 Mbp | 3 | 116.75 Mbp |
40 | 13 | 25.23 Mbp | 4 | 81.24 Mbp |
50 | 18 | 21.43 Mbp | 6 | 73.84 Mbp |
60 | 24 | 16.94 Mbp | 8 | 42.00 Mbp |
70 | 33 | 11.27 Mbp | 11 | 31.47 Mbp |
80 | 45 | 8.23 Mbp | 16 | 20.64 Mbp |
90 | 62 | 5.72 Mbp | 24 | 12.73 Mbp |
100 | 88 | 2.73 Mbp | 35 | 8.75 Mbp |
1.076x | 358 | 1.27 Gbp | 109 | 1.27 Gbp |
NG based on genome size 1.18 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 27 May 2023
bPasSan2.alt.cur.20230527.fasta.gz (315.2 MiB)
Quality: not computed
Version assembly_curated from 27 May 2023
bPasSan2.alt.cur.20230527.fasta.gz (315.2 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 8 | 12.26 Mbp | 8 | 12.26 Mbp |
20 | 19 | 8.45 Mbp | 19 | 8.45 Mbp |
30 | 34 | 6.76 Mbp | 34 | 6.87 Mbp |
40 | 56 | 4.77 Mbp | 55 | 4.84 Mbp |
50 | 84 | 3.68 Mbp | 83 | 3.70 Mbp |
60 | 119 | 2.72 Mbp | 119 | 2.72 Mbp |
70 | 174 | 1.78 Mbp | 173 | 1.79 Mbp |
80 | 256 | 1.09 Mbp | 254 | 1.14 Mbp |
90 | 429 | 364.87 Kbp | 412 | 445.14 Kbp |
100 | 0 | 0 | ||
0.962x | 1349 | 1.13 Gbp | 1242 | 1.13 Gbp |
NG based on genome size 1.18 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_rockefeller from 7 March 2023
bPasSan2.MT.20230307.fasta.gz (5.4 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 7 March 2023
bPasSan2.MT.20230307.fasta.gz (5.4 KiB)
Quality: not computed
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.