Patagioenas cayennensis

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) bPatCay1 76.05 Gbp N/A 39.9 GiB
PacBio HiFi (.bam) bPatCay1 76.42 Gbp N/A 312.3 GiB
Arima bPatCay1 130.26 Gbp N/A 60.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 8 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bPatCay1 PacBio HiFi (.fq) 76.05 Gbp N/A 39.9 GiB
PacBio HiFi (.bam) 76.42 Gbp N/A 312.3 GiB
Arima 130.26 Gbp N/A 60.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 8 May 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 31 October 2025
bPatCay1.hap1.cur.20251031.fasta.gz (319.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 79.27 Mbp 1 212.88 Mbp
20 4 45.26 Mbp 2 166.34 Mbp
30 7 40.38 Mbp 2 166.34 Mbp
40 11 29.58 Mbp 3 122.04 Mbp
50 15 24.36 Mbp 5 79.55 Mbp
60 21 17.15 Mbp 6 78.68 Mbp
70 29 13.92 Mbp 8 55.77 Mbp
80 41 8.65 Mbp 13 23.69 Mbp
90 59 5.49 Mbp 20 11.29 Mbp
100 341 7.10 Kbp 193 7.10 Kbp
1.000x 341 1.23 Gbp 193 1.23 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 31 October 2025
bPatCay1.hap2.cur.20251031.fasta.gz (282.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 79.53 Mbp 1 211.22 Mbp
20 3 73.33 Mbp 2 166.20 Mbp
30 5 54.97 Mbp 2 166.20 Mbp
40 7 41.77 Mbp 3 121.35 Mbp
50 10 33.35 Mbp 4 79.71 Mbp
60 14 23.94 Mbp 5 78.66 Mbp
70 20 16.69 Mbp 7 56.30 Mbp
80 27 13.28 Mbp 11 22.81 Mbp
90 37 7.49 Mbp 17 13.66 Mbp
100 192 7.47 Kbp 126 7.47 Kbp
1.000x 192 1.08 Gbp 126 1.08 Gbp
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 31 October 2025
bPatCay1.MT.20251031.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.