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Raw Data by Technology
| Datatype | Individual | Bases | Coverage | Bytes | Access |
|---|---|---|---|---|---|
| PacBio HiFi (.fq) | bPatPic1 | 63.54 Gbp | N/A | 29.8 GiB | |
| PacBio HiFi (.bam) | bPatPic1 | 63.72 Gbp | N/A | 260.5 GiB | |
| Arima | bPatPic1 | 112.95 Gbp | N/A | 54.6 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 9 May 2024.
Coverage based on genome size .
Last upload on 9 May 2024.
Raw Data by Individual
| Individual | Datatype | Bases | Coverage | Bytes | Access |
|---|---|---|---|---|---|
| bPatPic1 | PacBio HiFi (.fq) | 63.54 Gbp | N/A | 29.8 GiB | |
| PacBio HiFi (.bam) | 63.72 Gbp | N/A | 260.5 GiB | ||
| Arima | 112.95 Gbp | N/A | 54.6 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 9 May 2024.
Coverage based on genome size .
Last upload on 9 May 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 31 October 2025
bPatPic1.hap1.cur.20251031.fasta.gz (320.7 MiB)
Quality: not computed
Version assembly_curated from 31 October 2025
bPatPic1.hap1.cur.20251031.fasta.gz (320.7 MiB)
Quality: not computed
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 3 | 38.83 Mbp | 1 | 212.59 Mbp |
| 20 | 7 | 26.47 Mbp | 2 | 166.04 Mbp |
| 30 | 12 | 22.07 Mbp | 2 | 166.04 Mbp |
| 40 | 18 | 18.43 Mbp | 3 | 121.30 Mbp |
| 50 | 25 | 15.76 Mbp | 5 | 79.65 Mbp |
| 60 | 34 | 12.39 Mbp | 7 | 69.27 Mbp |
| 70 | 45 | 9.73 Mbp | 9 | 37.28 Mbp |
| 80 | 62 | 5.78 Mbp | 13 | 21.53 Mbp |
| 90 | 92 | 2.66 Mbp | 22 | 8.69 Mbp |
| 100 | 721 | 5.02 Kbp | 541 | 5.02 Kbp |
| 1.000x | 721 | 1.24 Gbp | 541 | 1.24 Gbp |
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 31 October 2025
bPatPic1.hap2.cur.20251031.fasta.gz (297.9 MiB)
Quality: not computed
Version assembly_curated from 31 October 2025
bPatPic1.hap2.cur.20251031.fasta.gz (297.9 MiB)
Quality: not computed
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 3 | 46.11 Mbp | 1 | 212.73 Mbp |
| 20 | 6 | 30.61 Mbp | 2 | 165.11 Mbp |
| 30 | 11 | 24.90 Mbp | 2 | 165.11 Mbp |
| 40 | 15 | 23.09 Mbp | 3 | 121.18 Mbp |
| 50 | 21 | 18.44 Mbp | 5 | 78.46 Mbp |
| 60 | 28 | 15.31 Mbp | 6 | 69.24 Mbp |
| 70 | 37 | 11.43 Mbp | 10 | 21.82 Mbp |
| 80 | 53 | 5.56 Mbp | 16 | 13.65 Mbp |
| 90 | 82 | 2.69 Mbp | 32 | 4.58 Mbp |
| 100 | 725 | 4.90 Kbp | 598 | 4.90 Kbp |
| 1.000x | 725 | 1.19 Gbp | 598 | 1.19 Gbp |
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 31 October 2026
bPatPic1.MT.20261031.fasta.gz (5.4 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 31 October 2026
bPatPic1.MT.20261031.fasta.gz (5.4 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.