Patagioenas speciosa

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) bPatSpe1 79.57 Gbp N/A 40.0 GiB
PacBio HiFi (.bam) bPatSpe1 80.19 Gbp N/A 326.0 GiB
Arima bPatSpe1 124.41 Gbp N/A 60.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 9 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bPatSpe1 PacBio HiFi (.fq) 79.57 Gbp N/A 40.0 GiB
PacBio HiFi (.bam) 80.19 Gbp N/A 326.0 GiB
Arima 124.41 Gbp N/A 60.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 9 May 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 31 October 2025
bPatSpe1.hap1.cur.20251031.fasta.gz (326.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 59.90 Mbp 1 219.75 Mbp
20 5 40.13 Mbp 2 167.75 Mbp
30 9 32.13 Mbp 2 167.75 Mbp
40 13 28.62 Mbp 4 84.85 Mbp
50 17 25.06 Mbp 5 83.34 Mbp
60 23 20.78 Mbp 7 71.94 Mbp
70 30 16.64 Mbp 9 32.75 Mbp
80 39 11.29 Mbp 13 24.60 Mbp
90 57 3.99 Mbp 21 8.91 Mbp
100 351 10.24 Kbp 208 10.24 Kbp
1.000x 351 1.28 Gbp 208 1.28 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 31 October 2025
bPatSpe1.hap2.cur.20251031.fasta.gz (292.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 54.79 Mbp 1 218.86 Mbp
20 5 37.68 Mbp 2 167.98 Mbp
30 8 31.11 Mbp 2 167.98 Mbp
40 12 28.94 Mbp 3 123.71 Mbp
50 17 19.84 Mbp 4 83.09 Mbp
60 23 15.82 Mbp 6 72.10 Mbp
70 31 12.33 Mbp 7 60.09 Mbp
80 42 9.05 Mbp 12 22.27 Mbp
90 61 4.18 Mbp 19 8.31 Mbp
100 281 13.90 Kbp 160 13.90 Kbp
1.000x 281 1.15 Gbp 160 1.15 Gbp
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 31 October 2025
bPatSpe1.MT.20251031.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.