Patagioenas squamosa

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) bPatSqu1 58.92 Gbp N/A 29.4 GiB
PacBio HiFi (.bam) bPatSqu1 59.30 Gbp N/A 241.8 GiB
Arima bPatSqu1 152.33 Gbp N/A 73.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 9 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bPatSqu1 PacBio HiFi (.fq) 58.92 Gbp N/A 29.4 GiB
PacBio HiFi (.bam) 59.30 Gbp N/A 241.8 GiB
Arima 152.33 Gbp N/A 73.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 9 May 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 31 October 2025
bPatSqu1.hap1.cur.20251031.fasta.gz (313.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 4 26.72 Mbp 1 212.16 Mbp
20 9 22.41 Mbp 2 164.16 Mbp
30 15 19.35 Mbp 2 164.16 Mbp
40 22 14.94 Mbp 3 122.00 Mbp
50 31 12.75 Mbp 5 80.50 Mbp
60 42 9.82 Mbp 6 79.21 Mbp
70 57 6.76 Mbp 8 57.09 Mbp
80 78 4.48 Mbp 13 21.94 Mbp
90 115 2.33 Mbp 19 13.83 Mbp
100 463 5.76 Kbp 226 5.76 Kbp
1.000x 463 1.22 Gbp 226 1.22 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 31 October 2025
bPatSqu1.hap2.cur.20251031.fasta.gz (282.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 34.36 Mbp 1 212.51 Mbp
20 6 29.42 Mbp 2 163.97 Mbp
30 11 22.27 Mbp 2 163.97 Mbp
40 17 18.73 Mbp 3 121.69 Mbp
50 23 16.62 Mbp 4 80.55 Mbp
60 30 13.19 Mbp 6 69.53 Mbp
70 40 9.22 Mbp 7 56.59 Mbp
80 53 6.39 Mbp 12 21.18 Mbp
90 79 2.96 Mbp 18 11.51 Mbp
100 365 8.61 Kbp 199 8.61 Kbp
1.000x 365 1.10 Gbp 199 1.10 Gbp
NG based on genome size .
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.