Periophthalmus magnuspinnatus

Korean giant-fin mudskipper

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fPerMag1: GCA_009829125.3 fPerMag1: GCA_009829135.1
ENA fPerMag1: GCA_009829125.3 fPerMag1: GCA_009829135.1
UCSC Genome Browser fPerMag1: GCA_009829125.3 fPerMag1: GCA_009829135.1

metadata.yaml (view) (edit on github)
species:
  common_name: Korean giant-fin mudskipper
  family:
    name: Gobiidae
  genome_size: 1000000000
  genome_size_method: null
  individuals:
  - short_name: fPerMag1
  name: Periophthalmus magnuspinnatus
  order:
    name: Gobiiformes
  short_name: fPerMag
  taxon_id: 409849
  project: [ vgp ]
Copyright Chul Lee, used with permission
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fPerMag1 69.64 Gbp 69.64x 121.1 GiB
10x fPerMag1 73.95 Gbp 73.95x 34.5 GiB
Bionano fPerMag1 N/A 743.85x 1.4 GiB
Arima fPerMag1 95.06 Gbp 95.06x 57.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 15 August 2019.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fPerMag1 PacBio CLR 69.64 Gbp 69.64x 121.1 GiB
10x 73.95 Gbp 73.95x 34.5 GiB
Bionano N/A 743.85x 1.4 GiB
Arima 95.06 Gbp 95.06x 57.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.00 Gbp.
Last upload on 15 August 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 7 December 2022
fPerMag1.pri.cur.20221207.fasta.gz (213.5 MiB)

Quality: 37.8 errors/Mb (QV=44.23)

Contigs Scaffolds
NG LG Len LG Len
10 11 6.84 Mbp 2 36.17 Mbp
20 29 4.41 Mbp 5 34.91 Mbp
30 58 2.86 Mbp 8 33.84 Mbp
40 99 2.12 Mbp 11 32.62 Mbp
50 155 1.54 Mbp 14 31.52 Mbp
60 236 0.98 Mbp 17 29.02 Mbp
70 389 402.72 Kbp 21 24.17 Mbp
80 0 0
90 0 0
100 0 0
0.745x 822 0.75 Gbp 122 0.75 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 7 December 2022
fPerMag1.alt.cur.20221207.fasta.gz (199.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 56 1.26 Mbp 56 1.26 Mbp
20 158 0.80 Mbp 158 0.80 Mbp
30 309 0.56 Mbp 309 0.56 Mbp
40 522 397.04 Kbp 522 397.04 Kbp
50 830 264.27 Kbp 830 264.27 Kbp
60 1344 138.71 Kbp 1344 138.71 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.695x 2773 0.70 Gbp 2773 0.70 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fPerMag1.MT.20191002.fasta.gz (4.9 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.