Peromyscus maniculatus

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank mPerMan1: GCA_026229955.1 mPerMan1: GCA_026167925.1
ENA mPerMan1: GCA_026229955.1 mPerMan1: GCA_026167925.1
UCSC Genome Browser mPerMan1: GCA_026229955.1 mPerMan1: GCA_026167925.1

No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mPerMan1 82.22 Gbp 29.07x 55.7 GiB
mPerMan3 193.03 Gbp 68.25x 90.1 GiB
PacBio HiFi (.bam) mPerMan3 196.41 Gbp 69.44x 648.2 GiB
Arima mPerMan3 235.64 Gbp 83.31x 127.4 GiB
Dovetail Genomics mPerMan1 74.81 Gbp 26.45x 35.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.83 Gbp.
Last upload on 19 August 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mPerMan1 PacBio HiFi (.fq) 82.22 Gbp 29.07x 55.7 GiB
Dovetail Genomics 74.81 Gbp 26.45x 35.5 GiB
mPerMan3 PacBio HiFi (.fq) 193.03 Gbp 68.25x 90.1 GiB
PacBio HiFi (.bam) 196.41 Gbp 69.44x 648.2 GiB
Arima 235.64 Gbp 83.31x 127.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.83 Gbp.
Last upload on 19 August 2025.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 1 September 2025
mPerMan1.pri.cur.20250901.fasta.gz (850.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 9 25.75 Mbp 2 175.32 Mbp
20 21 21.01 Mbp 4 159.68 Mbp
30 37 15.63 Mbp 5 157.45 Mbp
40 57 13.14 Mbp 7 140.33 Mbp
50 81 10.71 Mbp 10 110.44 Mbp
60 110 8.41 Mbp 12 100.40 Mbp
70 149 6.25 Mbp 15 83.42 Mbp
80 203 3.97 Mbp 19 73.38 Mbp
90 302 1.95 Mbp 23 62.23 Mbp
100 2115 4.81 Kbp 1638 8.08 Kbp
1.000x 2115 2.83 Gbp 1638 2.83 Gbp
NG based on genome size 2.83 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 1 September 2025
mPerMan1.alt.20250901.fasta.gz (788.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 5 39.36 Mbp 2 130.34 Mbp
20 15 24.09 Mbp 4 101.00 Mbp
30 27 18.80 Mbp 7 74.62 Mbp
40 44 13.96 Mbp 11 70.01 Mbp
50 64 12.29 Mbp 15 63.96 Mbp
60 88 9.36 Mbp 20 41.99 Mbp
70 122 6.82 Mbp 27 32.31 Mbp
80 166 4.81 Mbp 38 19.62 Mbp
90 241 2.60 Mbp 62 6.43 Mbp
100 1245 10.15 Kbp 1014 10.15 Kbp
1.000x 1245 2.65 Gbp 1014 2.65 Gbp
NG based on genome size 2.83 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.