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Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio CLR (.fq) | bPhaSup1 | 118.46 Gbp | N/A | 33.0 GiB | |
10x | bPhaSup1 | 81.47 Gbp | N/A | 37.5 GiB | |
Arima | bPhaSup1 | 178.79 Gbp | N/A | 87.4 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 12 May 2023.
Coverage based on genome size .
Last upload on 12 May 2023.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
bPhaSup1 | PacBio CLR (.fq) | 118.46 Gbp | N/A | 33.0 GiB | |
10x | 81.47 Gbp | N/A | 37.5 GiB | ||
Arima | 178.79 Gbp | N/A | 87.4 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 12 May 2023.
Coverage based on genome size .
Last upload on 12 May 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 23 June 2023
bPhaSup1.hap1.cur.20230623.fasta.gz (295.4 MiB)
Quality: not computed
Version assembly_curated from 23 June 2023
bPhaSup1.hap1.cur.20230623.fasta.gz (295.4 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 1 | 123.32 Mbp | 1 | 196.61 Mbp |
20 | 2 | 88.47 Mbp | 2 | 149.69 Mbp |
30 | 4 | 70.62 Mbp | 2 | 149.69 Mbp |
40 | 5 | 55.98 Mbp | 3 | 114.54 Mbp |
50 | 8 | 35.19 Mbp | 4 | 72.67 Mbp |
60 | 11 | 22.99 Mbp | 6 | 43.27 Mbp |
70 | 16 | 18.72 Mbp | 9 | 30.56 Mbp |
80 | 22 | 13.33 Mbp | 13 | 21.16 Mbp |
90 | 32 | 6.06 Mbp | 19 | 14.86 Mbp |
100 | 205 | 587 bp | 65 | 6.94 Kbp |
1.000x | 205 | 1.02 Gbp | 65 | 1.02 Gbp |
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 23 June 2023
bPhaSup1.hap2.decon.20230623.fasta.gz (318.5 MiB)
Quality: not computed
Version assembly_curated from 23 June 2023
bPhaSup1.hap2.decon.20230623.fasta.gz (318.5 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 55.98 Mbp | 2 | 55.98 Mbp |
20 | 4 | 40.33 Mbp | 4 | 40.33 Mbp |
30 | 8 | 22.99 Mbp | 8 | 22.99 Mbp |
40 | 12 | 21.16 Mbp | 12 | 21.16 Mbp |
50 | 17 | 18.94 Mbp | 17 | 18.94 Mbp |
60 | 23 | 15.64 Mbp | 23 | 15.64 Mbp |
70 | 31 | 12.13 Mbp | 31 | 12.13 Mbp |
80 | 40 | 9.18 Mbp | 40 | 9.18 Mbp |
90 | 57 | 3.58 Mbp | 57 | 3.58 Mbp |
100 | 230 | 3.60 Kbp | 230 | 3.60 Kbp |
1.000x | 230 | 1.01 Gbp | 230 | 1.01 Gbp |
NG based on genome size .
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.