Pipistrellus nathusii

Nathusius's pipistrelle

Included in the BAT1K and VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mPipNat
  name: Pipistrellus nathusii
  taxon_id: 59473
  common_name: Nathusius's pipistrelle
  order:
    name: Chiroptera
  family:
    name: Vespertilionidae
  individuals:
    - short_name: mPipNat1
      biosample_id: SAMEA115534661
      sex: female
  genome_size: 2122260000
  genome_size_method: GoaT
  project: [ bat1k, vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) mPipNat1 89.83 Gbp 42.33x 30.7 GiB
Arima mPipNat1 241.70 Gbp 113.89x 69.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.12 Gbp.
Last upload on 22 October 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mPipNat1 PacBio HiFi (.bam) 89.83 Gbp 42.33x 30.7 GiB
Arima 241.70 Gbp 113.89x 69.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.12 Gbp.
Last upload on 22 October 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 11 December 2024
mPipNat1.hap1.cur.20241211.fasta.gz (536.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 43 3.98 Mbp 2 195.21 Mbp
20 107 2.96 Mbp 3 192.53 Mbp
30 188 2.39 Mbp 4 109.31 Mbp
40 290 1.87 Mbp 6 99.81 Mbp
50 418 1.49 Mbp 8 85.23 Mbp
60 582 1.12 Mbp 11 74.15 Mbp
70 810 0.78 Mbp 14 56.01 Mbp
80 1154 470.27 Kbp 18 48.65 Mbp
90 2561 25.35 Kbp 712 26.15 Kbp
100 0 0
0.903x 2898 1.92 Gbp 1062 1.92 Gbp
NG based on genome size 2.12 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 11 December 2024
mPipNat1.hap2.cur.20241211.fasta.gz (538.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 42 3.81 Mbp 2 196.65 Mbp
20 105 2.98 Mbp 3 191.84 Mbp
30 185 2.41 Mbp 4 102.50 Mbp
40 284 1.94 Mbp 6 96.96 Mbp
50 406 1.56 Mbp 8 86.27 Mbp
60 561 1.21 Mbp 11 71.84 Mbp
70 765 0.89 Mbp 14 54.99 Mbp
80 1065 0.56 Mbp 19 47.53 Mbp
90 1697 164.48 Kbp 103 0.53 Mbp
100 0 0
0.924x 2485 1.96 Gbp 653 1.96 Gbp
NG based on genome size 2.12 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 22 October 2024
mPipNat1.MT.20241022.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.