Podarcis cretensis
cretan wall lizard
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | rPodCre2: GCA_951804945.1 | rPodCre2: GCA_951804955.1 |
ENA | rPodCre2: GCA_951804945.1 | rPodCre2: GCA_951804955.1 |
UCSC Genome Browser | rPodCre2: GCA_951804945.1 | rPodCre2: GCA_951804955.1 |
metadata.yaml (view) (edit on github) |
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No image
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.bam) | rPodCre2 | 43.47 Gbp | 22.49x | 27.6 GiB | |
Arima | rPodCre1 | 419.49 Gbp | 217.04x | 126.1 GiB | |
rPodCre2 | 206.73 Gbp | 106.96x | 62.3 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.93 Gbp.
Last upload on 22 April 2023.
Coverage based on genome size 1.93 Gbp.
Last upload on 22 April 2023.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
rPodCre1 | Arima | 419.49 Gbp | 217.04x | 126.1 GiB | |
rPodCre2 | PacBio HiFi (.bam) | 43.47 Gbp | 22.49x | 27.6 GiB | |
Arima | 206.73 Gbp | 106.96x | 62.3 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 1.93 Gbp.
Last upload on 22 April 2023.
Coverage based on genome size 1.93 Gbp.
Last upload on 22 April 2023.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 16 August 2023
rPodCre2.pri.cur.20230816.fasta.gz (436.2 MiB)
Quality: not computed
Version assembly_curated from 16 August 2023
rPodCre2.pri.cur.20230816.fasta.gz (436.2 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 116.66 Mbp | 2 | 128.45 Mbp |
20 | 4 | 89.54 Mbp | 3 | 126.79 Mbp |
30 | 6 | 78.54 Mbp | 5 | 103.04 Mbp |
40 | 9 | 63.19 Mbp | 7 | 94.62 Mbp |
50 | 12 | 51.11 Mbp | 9 | 81.67 Mbp |
60 | 17 | 34.45 Mbp | 12 | 63.68 Mbp |
70 | 28 | 11.80 Mbp | 15 | 51.45 Mbp |
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.780x | 98 | 1.51 Gbp | 51 | 1.51 Gbp |
NG based on genome size 1.93 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 16 August 2023
rPodCre2.alt.cur.20230816.fasta.gz (398.4 MiB)
Quality: not computed
Version assembly_curated from 16 August 2023
rPodCre2.alt.cur.20230816.fasta.gz (398.4 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 32 | 4.92 Mbp | 32 | 4.92 Mbp |
20 | 78 | 3.58 Mbp | 78 | 3.58 Mbp |
30 | 139 | 2.80 Mbp | 139 | 2.80 Mbp |
40 | 221 | 1.99 Mbp | 221 | 1.99 Mbp |
50 | 337 | 1.40 Mbp | 337 | 1.40 Mbp |
60 | 517 | 0.81 Mbp | 517 | 0.81 Mbp |
70 | 1231 | 37.58 Kbp | 1231 | 37.58 Kbp |
80 | 0 | 0 | ||
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.710x | 1936 | 1.37 Gbp | 1936 | 1.37 Gbp |
NG based on genome size 1.93 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 3 May 2023
rPodCre2.MT.20230503.fasta.gz (5.3 KiB)
Quality: not computed
Version assembly_MT_cambridge from 3 May 2023
rPodCre2.MT.20230503.fasta.gz (5.3 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.