Psittacula echo

Mauritius parakeet

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bPsiEch
  name: Psittacula echo
  taxon_id: 232653
  common_name: Mauritius parakeet
  order:
    name: Psittaciformes
  family:
    name: Psittacidae
  individuals:
    - short_name: bPsiEch1
      biosample_id: SAMEA12361723
      sex: female
    - short_name: bPsiEch3
      biosample_id: SAMEA12361725
      sex:
  genome_size: 1251840000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bPsiEch3 68.75 Gbp 54.92x 119.7 GiB
Arima bPsiEch1 80.50 Gbp 64.30x 24.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.25 Gbp.
Last upload on 8 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bPsiEch1 Arima 80.50 Gbp 64.30x 24.3 GiB
bPsiEch3 PacBio HiFi (.bam) 68.75 Gbp 54.92x 119.7 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.25 Gbp.
Last upload on 8 August 2023.
Assemblies
Individual 3 Primary Assembly
Version assembly_curated from 17 August 2023
bPsiEch3.pri.cur.20230817.fasta.gz (339.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 7 14.28 Mbp 1 168.07 Mbp
20 19 9.77 Mbp 2 161.94 Mbp
30 32 8.62 Mbp 3 128.36 Mbp
40 49 6.58 Mbp 4 122.79 Mbp
50 69 5.75 Mbp 5 106.99 Mbp
60 93 4.57 Mbp 6 90.32 Mbp
70 125 3.26 Mbp 8 66.74 Mbp
80 172 2.22 Mbp 12 21.18 Mbp
90 252 1.08 Mbp 22 7.78 Mbp
100 0 0
0.962x 530 1.20 Gbp 172 1.20 Gbp
NG based on genome size 1.25 Gbp.
Individual 3 Alternate Assembly
Version assembly_curated from 17 August 2023
bPsiEch3.alt.cur.20230817.fasta.gz (221.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 35 2.64 Mbp 35 2.64 Mbp
20 91 1.88 Mbp 91 1.88 Mbp
30 170 1.34 Mbp 170 1.34 Mbp
40 281 0.93 Mbp 281 0.93 Mbp
50 452 0.57 Mbp 452 0.57 Mbp
60 936 85.93 Kbp 936 85.93 Kbp
70 0 0
80 0 0
90 0 0
100 0 0
0.633x 2130 0.79 Gbp 2130 0.79 Gbp
NG based on genome size 1.25 Gbp.
Individual 3 Mitochondrial Assembly
Version assembly_MT_cambridge from 2 August 2023
bPsiEch3.MT.20230802.fasta.gz (5.6 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.