Rhineura floridana
Florida worm lizard
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | rRhiFlo1: GCA_030035675.1 rRhiFlo1: GCA_030035715.1 | |
ENA | rRhiFlo1: GCA_030035675.1 rRhiFlo1: GCA_030035715.1 | |
UCSC Genome Browser | rRhiFlo1: GCA_030035675.1 rRhiFlo1: GCA_030035715.1 |
metadata.yaml (view) (edit on github) |
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CC BY-NC-SA 2.0 Mary Keim (flickr)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 1.62 Gbp.
Last upload on 7 August 2024.
Coverage based on genome size 1.62 Gbp.
Last upload on 7 August 2024.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size 1.62 Gbp.
Last upload on 7 August 2024.
Coverage based on genome size 1.62 Gbp.
Last upload on 7 August 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 6 April 2023
rRhiFlo1.hap1.decon.20230406.fasta.gz (673.9 MiB)
Quality: not computed
Version assembly_curated from 6 April 2023
rRhiFlo1.hap1.decon.20230406.fasta.gz (673.9 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 65.19 Mbp | 1 | 323.94 Mbp |
20 | 6 | 38.31 Mbp | 2 | 239.81 Mbp |
30 | 11 | 28.38 Mbp | 2 | 239.81 Mbp |
40 | 17 | 25.31 Mbp | 3 | 232.59 Mbp |
50 | 24 | 23.72 Mbp | 4 | 212.30 Mbp |
60 | 31 | 19.21 Mbp | 4 | 212.30 Mbp |
70 | 40 | 16.77 Mbp | 5 | 194.48 Mbp |
80 | 51 | 14.82 Mbp | 6 | 188.58 Mbp |
90 | 62 | 12.98 Mbp | 7 | 158.20 Mbp |
100 | 75 | 11.65 Mbp | 8 | 155.10 Mbp |
1.428x | 836 | 2.32 Gbp | 623 | 2.32 Gbp |
NG based on genome size 1.62 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 6 April 2023
rRhiFlo1.hap2.cur.20230406.fasta.gz (668.5 MiB)
Quality: not computed
Version assembly_curated from 6 April 2023
rRhiFlo1.hap2.cur.20230406.fasta.gz (668.5 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 59.66 Mbp | 1 | 323.58 Mbp |
20 | 6 | 40.35 Mbp | 2 | 240.32 Mbp |
30 | 10 | 36.08 Mbp | 2 | 240.32 Mbp |
40 | 15 | 30.06 Mbp | 3 | 232.43 Mbp |
50 | 22 | 24.20 Mbp | 4 | 211.90 Mbp |
60 | 29 | 21.77 Mbp | 4 | 211.90 Mbp |
70 | 37 | 18.40 Mbp | 5 | 188.68 Mbp |
80 | 46 | 15.52 Mbp | 6 | 158.44 Mbp |
90 | 57 | 13.98 Mbp | 7 | 155.51 Mbp |
100 | 70 | 10.48 Mbp | 8 | 136.23 Mbp |
1.418x | 318 | 2.30 Gbp | 76 | 2.31 Gbp |
NG based on genome size 1.62 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 6 March 2023
rRhiFlo1.MT.20230306.fasta.gz (5.4 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 6 March 2023
rRhiFlo1.MT.20230306.fasta.gz (5.4 KiB)
Quality: not computed
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.