Silurus aristotelis

Aristotle's catfish

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fSilAri3: GCA_946808225.1 fSilAri3: GCA_946807865.1
ENA fSilAri3: GCA_946808225.1 fSilAri3: GCA_946807865.1
UCSC Genome Browser fSilAri3: GCA_946808225.1 fSilAri3: GCA_946807865.1

metadata.yaml (view) (edit on github)
species:
  short_name: fSilAri
  name: Silurus aristotelis
  taxon_id: 933932
  common_name: Aristotle's catfish
  order:
    name: Siluriformes
  family:
    name: Siluridae
  individuals:
    - short_name: fSilAri3
      biosample_id: SAMEA12595289
      sex: male
  genome_size: 1251840000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fSilAri3 42.86 Gbp 34.24x 23.9 GiB
Arima fSilAri3 135.66 Gbp 108.37x 40.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.25 Gbp.
Last upload on 9 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fSilAri3 PacBio HiFi (.bam) 42.86 Gbp 34.24x 23.9 GiB
Arima 135.66 Gbp 108.37x 40.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.25 Gbp.
Last upload on 9 February 2023.
Assemblies
Individual 3 Primary Assembly
Version assembly_curated from 8 March 2023
fSilAri3.pri.cur.20230308.fasta.gz (219.6 MiB)

Quality: 4.3 errors/Mb (QV=53.62)

Contigs Scaffolds
NG LG Len LG Len
10 8 11.21 Mbp 3 36.64 Mbp
20 22 7.61 Mbp 6 32.15 Mbp
30 43 4.87 Mbp 10 30.79 Mbp
40 76 2.97 Mbp 14 25.85 Mbp
50 138 1.46 Mbp 20 21.75 Mbp
60 362 226.23 Kbp 26 17.68 Mbp
70 0 0
80 0 0
90 0 0
100 0 0
0.639x 1036 0.80 Gbp 241 0.80 Gbp
NG based on genome size 1.25 Gbp.
Individual 3 Alternate Assembly
Version assembly_curated from 8 March 2023
fSilAri3.alt.cur.20230308.fasta.gz (198.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 138 0.55 Mbp 138 0.55 Mbp
20 467 282.73 Kbp 467 282.73 Kbp
30 1064 161.39 Kbp 1064 161.39 Kbp
40 2096 91.91 Kbp 2096 91.91 Kbp
50 4155 39.41 Kbp 4155 39.41 Kbp
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.570x 7617 0.71 Gbp 7617 0.71 Gbp
NG based on genome size 1.25 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.