Taurulus bubalis

long-spined sea scorpion

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank fTauBub2: GCA_910589615.1 fTauBub2: GCA_910589325.1
ENA fTauBub2: GCA_910589615.1 fTauBub2: GCA_910589325.1
UCSC Genome Browser fTauBub2: GCA_910589615.1 fTauBub2: GCA_910589325.1

metadata.yaml (view) (edit on github)
species:
  short_name: fTauBub
  name: Taurulus bubalis
  taxon_id: 61643
  common_name: long-spined sea scorpion
  order:
    name: Perciformes
  family:
    name: Cottidae
  individuals:
    - short_name: fTauBub2
      biosample_id: SAMEA7522994
      sex:
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-SA 3.0 Yashca (wikimedia)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) fTauBub2 23.89 Gbp 38.83x 20.0 GiB
10x fTauBub2 63.96 Gbp 103.98x 38.3 GiB
Arima fTauBub2 101.23 Gbp 164.56x 50.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.62 Gbp.
Last upload on 3 May 2022.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fTauBub2 PacBio HiFi (.bam) 23.89 Gbp 38.83x 20.0 GiB
10x 63.96 Gbp 103.98x 38.3 GiB
Arima 101.23 Gbp 164.56x 50.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 0.62 Gbp.
Last upload on 3 May 2022.
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 24 May 2021
fTauBub2.pri.cur.20210524.fasta.gz (173.0 MiB)

Quality: 4.7 errors/Mb (QV=53.26)

Contigs Scaffolds
NG LG Len LG Len
10 2 22.33 Mbp 1 47.70 Mbp
20 5 18.74 Mbp 2 43.50 Mbp
30 9 16.21 Mbp 4 30.39 Mbp
40 13 15.53 Mbp 6 29.55 Mbp
50 17 13.04 Mbp 8 29.14 Mbp
60 23 9.77 Mbp 10 28.35 Mbp
70 31 6.17 Mbp 12 27.68 Mbp
80 47 2.72 Mbp 15 24.36 Mbp
90 80 1.09 Mbp 17 22.72 Mbp
100 268 11.08 Kbp 26 16.83 Kbp
1.000x 269 0.62 Gbp 27 0.62 Gbp
NG based on genome size 0.62 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 24 May 2021
fTauBub2.alt.cur.20210524.fasta.gz (174.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 22 2.14 Mbp 22 2.14 Mbp
20 55 1.70 Mbp 55 1.70 Mbp
30 97 1.31 Mbp 97 1.31 Mbp
40 148 1.07 Mbp 148 1.07 Mbp
50 211 0.88 Mbp 211 0.88 Mbp
60 292 0.65 Mbp 292 0.65 Mbp
70 403 477.39 Kbp 403 477.39 Kbp
80 555 335.97 Kbp 555 335.97 Kbp
90 801 178.49 Kbp 801 178.49 Kbp
100 1777 6.56 Kbp 1777 6.56 Kbp
1.000x 1778 0.61 Gbp 1778 0.61 Gbp
NG based on genome size 0.62 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 23 February 2021
fTauBub2.MT.20210223.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.