Thalassophryne amazonica
prehistoric monster fish
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | fThaAma1: GCA_902500255.1 | fThaAma1: GCA_902500245.1 |
ENA | fThaAma1: GCA_902500255.1 | fThaAma1: GCA_902500245.1 |
UCSC Genome Browser | fThaAma1: GCA_902500255.1 | fThaAma1: GCA_902500245.1 |
metadata.yaml (view) (edit on github) |
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Copyright Ralf Britz/NHM, used with permission
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size 2.45 Gbp.
Last upload on 31 May 2019.
Coverage based on genome size 2.45 Gbp.
Last upload on 31 May 2019.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size 2.45 Gbp.
Last upload on 31 May 2019.
Coverage based on genome size 2.45 Gbp.
Last upload on 31 May 2019.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 26 September 2019
fThaAma1.pri.cur.20190926.fasta.gz (702.3 MiB)
Quality: 365.8 errors/Mb (QV=34.37)
Version assembly_curated from 26 September 2019
fThaAma1.pri.cur.20190926.fasta.gz (702.3 MiB)
Quality: 365.8 errors/Mb (QV=34.37)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 28 | 5.89 Mbp | 1 | 160.46 Mbp |
20 | 76 | 4.41 Mbp | 3 | 146.42 Mbp |
30 | 138 | 3.51 Mbp | 4 | 133.90 Mbp |
40 | 215 | 2.83 Mbp | 6 | 122.56 Mbp |
50 | 310 | 2.32 Mbp | 8 | 118.42 Mbp |
60 | 434 | 1.67 Mbp | 10 | 117.38 Mbp |
70 | 607 | 1.18 Mbp | 13 | 99.27 Mbp |
80 | 864 | 0.78 Mbp | 15 | 92.12 Mbp |
90 | 1284 | 401.77 Kbp | 18 | 72.82 Mbp |
100 | 3017 | 40 bp | 463 | 890 bp |
1.000x | 3018 | 2.43 Gbp | 464 | 2.45 Gbp |
NG based on genome size 2.45 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 26 September 2019
fThaAma1.alt.cur.20190926.fasta.gz (513.3 MiB)
Quality: not computed
Version assembly_curated from 26 September 2019
fThaAma1.alt.cur.20190926.fasta.gz (513.3 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 472 | 289.79 Kbp | 472 | 290.22 Kbp |
20 | 1186 | 215.72 Kbp | 1185 | 215.72 Kbp |
30 | 2106 | 172.80 Kbp | 2105 | 172.80 Kbp |
40 | 3236 | 142.47 Kbp | 3234 | 142.48 Kbp |
50 | 4594 | 119.17 Kbp | 4593 | 119.21 Kbp |
60 | 6225 | 98.75 Kbp | 6224 | 98.76 Kbp |
70 | 8197 | 81.00 Kbp | 8195 | 81.02 Kbp |
80 | 10646 | 63.97 Kbp | 10643 | 63.98 Kbp |
90 | 13875 | 46.24 Kbp | 13872 | 46.25 Kbp |
100 | 19586 | 193 bp | 19578 | 193 bp |
1.000x | 19587 | 1.77 Gbp | 19579 | 1.77 Gbp |
NG based on genome size 2.45 Gbp.
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.