Vanellus vanellus

Lapwing

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bVanVan
  name: Vanellus vanellus
  taxon_id: 100859
  common_name: Lapwing
  order:
    name: Charadriiformes
  family:
    name: Charadriidae
  individuals:
    - short_name: bVanVan1
      biosample_id: SAMEA113398832
      sex: male
  genome_size: 1633260000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bVanVan1 64.50 Gbp 39.49x 26.9 GiB
Arima bVanVan1 222.68 Gbp 136.34x 61.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.63 Gbp.
Last upload on 8 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bVanVan1 PacBio HiFi (.bam) 64.50 Gbp 39.49x 26.9 GiB
Arima 222.68 Gbp 136.34x 61.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.63 Gbp.
Last upload on 8 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_curated from 14 March 2025
bVanVan1.hap1.cur.20250314.fasta.gz (391.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 23 5.68 Mbp 1 223.04 Mbp
20 57 3.96 Mbp 2 170.75 Mbp
30 106 2.87 Mbp 3 130.04 Mbp
40 170 2.23 Mbp 5 86.09 Mbp
50 255 1.66 Mbp 7 68.90 Mbp
60 371 1.21 Mbp 12 25.61 Mbp
70 538 0.78 Mbp 20 13.47 Mbp
80 877 280.33 Kbp 103 0.54 Mbp
90 2860 21.43 Kbp 1916 22.00 Kbp
100 0 0
0.904x 3344 1.48 Gbp 2408 1.48 Gbp
NG based on genome size 1.63 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_curated from 14 March 2025
bVanVan1.hap2.cur.20250314.fasta.gz (378.8 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 24 5.60 Mbp 1 222.32 Mbp
20 59 4.10 Mbp 2 173.14 Mbp
30 104 3.11 Mbp 3 130.67 Mbp
40 163 2.47 Mbp 5 86.04 Mbp
50 242 1.74 Mbp 7 71.94 Mbp
60 355 1.20 Mbp 11 25.22 Mbp
70 529 0.72 Mbp 20 13.27 Mbp
80 949 147.47 Kbp 156 197.04 Kbp
90 0 0
100 0 0
0.820x 1567 1.34 Gbp 716 1.34 Gbp
NG based on genome size 1.63 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 12 March 2024
bVanVan1.MT.20240312.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.