Vipera berus

adder

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: rVipBer
  name: Vipera berus
  taxon_id: 31155
  common_name: adder
  order:
    name: Squamata
  family:
    name: Viperidae
  individuals:
    - short_name: rVipBer3
      biosample_id: SAMEA114293681
      sex: female
  genome_size: 2327640000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) rVipBer3 181.57 Gbp 78.01x 73.8 GiB
Arima rVipBer3 298.02 Gbp 128.04x 90.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.33 Gbp.
Last upload on 5 March 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rVipBer3 PacBio HiFi (.bam) 181.57 Gbp 78.01x 73.8 GiB
Arima 298.02 Gbp 128.04x 90.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.33 Gbp.
Last upload on 5 March 2024.
Assemblies
Individual 3 Haplotype 1 Assembly
Version assembly_curated from 26 June 2024
rVipBer3.hap1.cur.20240626.fasta.gz (481.0 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 16 10.69 Mbp 1 362.93 Mbp
20 43 7.20 Mbp 2 290.63 Mbp
30 79 5.75 Mbp 3 218.40 Mbp
40 127 4.13 Mbp 4 134.00 Mbp
50 202 2.41 Mbp 6 104.75 Mbp
60 340 1.24 Mbp 8 80.61 Mbp
70 727 253.56 Kbp 16 14.45 Mbp
80 0 0
90 0 0
100 0 0
0.728x 1536 1.69 Gbp 479 1.70 Gbp
NG based on genome size 2.33 Gbp.
Individual 3 Haplotype 2 Assembly
Version assembly_curated from 26 June 2024
rVipBer3.hap2.cur.20240626.fasta.gz (422.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 18 10.46 Mbp 1 362.98 Mbp
20 45 7.38 Mbp 2 288.14 Mbp
30 83 5.10 Mbp 3 216.58 Mbp
40 139 3.19 Mbp 4 123.54 Mbp
50 247 1.44 Mbp 6 92.06 Mbp
60 555 367.11 Kbp 13 19.42 Mbp
70 0 0
80 0 0
90 0 0
100 0 0
0.634x 1256 1.48 Gbp 348 1.48 Gbp
NG based on genome size 2.33 Gbp.
Individual 3 Mitochondrial Assembly
Version assembly_MT_cambridge from 5 March 2024
rVipBer3.MT.20240305.fasta.gz (5.4 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.