Vipera ursinii

Hungarian meadow viper

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


Resource Primary Assembly Alternate Assembly
GenBank rVipUrs1: GCA_947247035.1 rVipUrs1: GCA_947247025.1
ENA rVipUrs1: GCA_947247035.1 rVipUrs1: GCA_947247025.1
UCSC Genome Browser rVipUrs1: GCA_947247035.1 rVipUrs1: GCA_947247025.1

metadata.yaml (view) (edit on github)
species:
  short_name: rVipUrs
  name: Vipera ursinii
  taxon_id: 103942
  common_name: Hungarian meadow viper
  order:
    name: Squamata
  family:
    name: Viperidae
  individuals:
    - short_name: rVipUrs1
      biosample_id: SAMEA12832258
      sex: female
  genome_size: 2039130000
  genome_size_method: GoaT
  data_use_project: erga
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) rVipUrs1 44.51 Gbp 21.83x 28.3 GiB
Arima rVipUrs1 202.80 Gbp 99.46x 62.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.04 Gbp.
Last upload on 8 February 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
rVipUrs1 PacBio HiFi (.bam) 44.51 Gbp 21.83x 28.3 GiB
Arima 202.80 Gbp 99.46x 62.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.04 Gbp.
Last upload on 8 February 2023.
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 9 March 2023
rVipUrs1.pri.cur.20230309.fasta.gz (461.4 MiB)

Quality: 1.4 errors/Mb (QV=58.59)

Contigs Scaffolds
NG LG Len LG Len
10 30 5.02 Mbp 0 359.75 Mbp
20 76 4.01 Mbp 1 294.45 Mbp
30 135 2.94 Mbp 1 294.45 Mbp
40 216 2.12 Mbp 2 212.82 Mbp
50 328 1.59 Mbp 4 120.14 Mbp
60 493 0.96 Mbp 6 90.32 Mbp
70 795 449.59 Kbp 8 45.96 Mbp
80 0 0
90 0 0
100 0 0
0.797x 2203 1.62 Gbp 384 1.63 Gbp
NG based on genome size 2.04 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 9 March 2023
rVipUrs1.alt.cur.20230309.fasta.gz (335.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 317 461.64 Kbp 316 461.94 Kbp
20 864 310.37 Kbp 861 310.99 Kbp
30 1669 208.82 Kbp 1664 209.16 Kbp
40 2893 131.34 Kbp 2885 131.69 Kbp
50 5076 64.20 Kbp 5065 64.32 Kbp
60 0 0
70 0 0
80 0 0
90 0 0
100 0 0
0.579x 9587 1.18 Gbp 9575 1.18 Gbp
NG based on genome size 2.04 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the ERGA Pilot Project Official Guidelines and contact ERGA with any questions.