Zeus faber

John Dory

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: fZeuFab
  name: Zeus faber
  taxon_id: 64108
  common_name: John Dory
  order:
    name: Zeiformes
  family:
    name: Zeidae
  individuals:
    - short_name: fZeuFab1
      biosample_id: SAMEA104384836
    - short_name: fZeuFab8
      biosample_id: SAMEA111562156
      sex:
  genome_size:
  genome_size_method:
  project: [ vgp ]
CC BY-NC-SA 2.0 Sarah Faulwetter (flickr)
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio CLR fZeuFab1 71.68 Gbp N/A 128.3 GiB
PacBio HiFi (.bam) fZeuFab8 35.75 Gbp N/A 23.7 GiB
10x fZeuFab1 104.63 Gbp N/A 69.6 GiB
Arima fZeuFab8 251.31 Gbp N/A 80.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 26 June 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
fZeuFab1 PacBio CLR 71.68 Gbp N/A 128.3 GiB
10x 104.63 Gbp N/A 69.6 GiB
fZeuFab8 PacBio HiFi (.bam) 35.75 Gbp N/A 23.7 GiB
Arima 251.31 Gbp N/A 80.2 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 26 June 2023.
Assemblies
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
fZeuFab1.MT.20191003.fasta.gz (5.1 KiB)

Quality: not computed
Individual 8 Primary Assembly
Version assembly_curated from 16 August 2023
fZeuFab8.pri.cur.20230816.fasta.gz (223.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 19 3.57 Mbp 2 52.95 Mbp
20 46 2.63 Mbp 4 38.03 Mbp
30 80 2.20 Mbp 6 36.47 Mbp
40 120 1.77 Mbp 8 35.01 Mbp
50 171 1.45 Mbp 10 34.48 Mbp
60 232 1.19 Mbp 13 32.89 Mbp
70 308 0.95 Mbp 15 32.12 Mbp
80 409 0.65 Mbp 18 31.31 Mbp
90 560 409.28 Kbp 20 28.87 Mbp
100 1078 1.00 Kbp 191 1.00 Kbp
1.000x 1078 0.80 Gbp 191 0.80 Gbp
NG based on genome size .
Individual 8 Alternate Assembly
Version assembly_curated from 16 August 2023
fZeuFab8.alt.cur.20230816.fasta.gz (225.1 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 52 1.03 Mbp 52 1.03 Mbp
20 146 0.75 Mbp 146 0.75 Mbp
30 274 0.56 Mbp 274 0.56 Mbp
40 441 426.01 Kbp 441 426.01 Kbp
50 656 331.07 Kbp 656 331.07 Kbp
60 933 257.35 Kbp 933 257.35 Kbp
70 1297 189.77 Kbp 1297 189.77 Kbp
80 1817 124.27 Kbp 1817 124.27 Kbp
90 2701 66.17 Kbp 2701 66.17 Kbp
100 5370 2.77 Kbp 5370 2.77 Kbp
1.000x 5370 0.81 Gbp 5370 0.81 Gbp
NG based on genome size .
Individual 8 Mitochondrial Assembly
Version assembly_MT_cambridge from 24 June 2023
fZeuFab8.MT.20230624.fasta.gz (5.3 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.