Accipiter nisus

Eurasian sparrowhawk

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bAccNis
  name: Accipiter nisus
  taxon_id: 211598
  common_name: Eurasian sparrowhawk
  order:
    name: Accipitriformes
  family:
    name: Accipitridae
  individuals:
    - short_name: bAccNis1
      biosample_id: SAMEA114594454
      sex:
  genome_size: 1095360000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bAccNis1 74.32 Gbp 67.85x 24.2 GiB
Arima bAccNis1 96.97 Gbp 88.53x 26.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.10 Gbp.
Last upload on 16 September 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bAccNis1 PacBio HiFi (.bam) 74.32 Gbp 67.85x 24.2 GiB
Arima 96.97 Gbp 88.53x 26.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.10 Gbp.
Last upload on 16 September 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 19 September 2024
bAccNis1.hap1.asm.20240919.fasta.gz (315.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 9 10.71 Mbp 2 86.53 Mbp
20 20 8.47 Mbp 3 78.68 Mbp
30 34 7.03 Mbp 4 76.64 Mbp
40 50 6.00 Mbp 7 47.68 Mbp
50 71 5.09 Mbp 9 44.84 Mbp
60 94 4.33 Mbp 11 44.14 Mbp
70 123 3.43 Mbp 14 39.45 Mbp
80 159 2.81 Mbp 17 36.00 Mbp
90 204 2.15 Mbp 20 32.46 Mbp
100 264 1.54 Mbp 24 22.86 Mbp
1.263x 1305 1.38 Gbp 838 1.38 Gbp
NG based on genome size 1.10 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 19 September 2024
bAccNis1.hap2.asm.20240919.fasta.gz (302.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 9 10.23 Mbp 2 78.12 Mbp
20 21 8.11 Mbp 3 74.16 Mbp
30 35 6.86 Mbp 5 49.96 Mbp
40 53 5.79 Mbp 8 44.82 Mbp
50 73 4.93 Mbp 10 44.40 Mbp
60 98 3.97 Mbp 13 39.44 Mbp
70 129 3.12 Mbp 16 37.05 Mbp
80 167 2.59 Mbp 19 32.12 Mbp
90 214 2.09 Mbp 23 24.62 Mbp
100 280 1.34 Mbp 28 17.36 Mbp
1.177x 946 1.29 Gbp 520 1.29 Gbp
NG based on genome size 1.10 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 19 September 2024
bAccNis1.MT.20240919.fasta.gz (5.2 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.