Alopochen aegyptiaca

Egyptian goose

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bAloAeg
  name: Alopochen aegyptiaca
  taxon_id: 30382
  common_name: Egyptian goose
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bAloAeg2
      biosample_id: SAMEA113398845
      sex: female
  genome_size: 1364310000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bAloAeg2 126.94 Gbp 93.05x 41.5 GiB
Arima bAloAeg2 62.15 Gbp 45.55x 17.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.36 Gbp.
Last upload on 17 May 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bAloAeg2 PacBio HiFi (.bam) 126.94 Gbp 93.05x 41.5 GiB
Arima 62.15 Gbp 45.55x 17.3 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.36 Gbp.
Last upload on 17 May 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_cambridge from 1 June 2024
bAloAeg2.hap1.asm.20240601.fasta.gz (320.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 9 12.08 Mbp 1 208.68 Mbp
20 23 8.72 Mbp 2 160.25 Mbp
30 41 6.96 Mbp 3 121.12 Mbp
40 63 5.65 Mbp 4 85.20 Mbp
50 90 4.50 Mbp 6 64.87 Mbp
60 125 3.46 Mbp 9 32.49 Mbp
70 171 2.31 Mbp 15 20.80 Mbp
80 246 1.40 Mbp 26 6.63 Mbp
90 449 284.58 Kbp 137 347.37 Kbp
100 0 0
0.925x 930 1.26 Gbp 573 1.26 Gbp
NG based on genome size 1.36 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_cambridge from 1 June 2024
bAloAeg2.hap2.asm.20240601.fasta.gz (287.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 9 12.01 Mbp 1 207.99 Mbp
20 23 8.47 Mbp 2 159.27 Mbp
30 41 6.82 Mbp 3 120.74 Mbp
40 64 4.98 Mbp 4 77.39 Mbp
50 95 3.94 Mbp 7 37.95 Mbp
60 134 3.11 Mbp 12 22.35 Mbp
70 196 1.52 Mbp 19 12.41 Mbp
80 410 165.00 Kbp 117 218.00 Kbp
90 0 0
100 0 0
0.817x 948 1.12 Gbp 623 1.12 Gbp
NG based on genome size 1.36 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 1 June 2024
bAloAeg2.MT.20240601.fasta.gz (5.1 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.