CC BY 2.0 Peter Tan (Wikimedia)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 11 June 2024.
Coverage based on genome size .
Last upload on 11 June 2024.
Raw Data by Individual
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 11 June 2024.
Coverage based on genome size .
Last upload on 11 June 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 10 July 2023
bAmaOch1.HiC.hap1.20230710.fasta.gz (328.7 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 10 July 2023
bAmaOch1.HiC.hap1.20230710.fasta.gz (328.7 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 42.41 Mbp | 1 | 137.84 Mbp |
20 | 6 | 28.39 Mbp | 2 | 132.31 Mbp |
30 | 11 | 24.54 Mbp | 3 | 125.87 Mbp |
40 | 16 | 23.11 Mbp | 4 | 93.40 Mbp |
50 | 22 | 17.62 Mbp | 6 | 86.17 Mbp |
60 | 29 | 13.61 Mbp | 7 | 74.04 Mbp |
70 | 39 | 11.45 Mbp | 10 | 32.07 Mbp |
80 | 53 | 6.89 Mbp | 15 | 17.62 Mbp |
90 | 114 | 0.65 Mbp | 45 | 0.72 Mbp |
100 | 1803 | 11.17 Kbp | 1684 | 11.17 Kbp |
1.000x | 1803 | 1.21 Gbp | 1684 | 1.21 Gbp |
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 10 July 2023
bAmaOch1.HiC.hap2.20230710.fasta.gz (381.8 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 10 July 2023
bAmaOch1.HiC.hap2.20230710.fasta.gz (381.8 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 5 | 28.38 Mbp | 2 | 133.33 Mbp |
20 | 10 | 24.95 Mbp | 3 | 125.96 Mbp |
30 | 17 | 22.66 Mbp | 4 | 94.58 Mbp |
40 | 25 | 17.63 Mbp | 6 | 85.98 Mbp |
50 | 35 | 12.75 Mbp | 8 | 71.34 Mbp |
60 | 50 | 7.73 Mbp | 11 | 40.65 Mbp |
70 | 74 | 4.22 Mbp | 16 | 21.19 Mbp |
80 | 137 | 1.26 Mbp | 35 | 2.26 Mbp |
90 | 570 | 170.81 Kbp | 435 | 174.01 Kbp |
100 | 2669 | 12.66 Kbp | 2508 | 12.66 Kbp |
1.000x | 2669 | 1.51 Gbp | 2508 | 1.51 Gbp |
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 10 July 2023
bAmaOch1.MT.20230710.fasta.gz (5.7 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 10 July 2023
bAmaOch1.MT.20230710.fasta.gz (5.7 KiB)
Quality: not computed
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.