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Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.fq) | bAnoHya1 | 50.29 Gbp | N/A | 28.9 GiB | |
PacBio HiFi (.bam) | bAnoHya1 | 376.35 Gbp | N/A | 216.0 GiB | |
Arima | bAnoHya1 | 68.79 Gbp | N/A | 36.6 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 20 March 2024.
Coverage based on genome size .
Last upload on 20 March 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
bAnoHya1 | PacBio HiFi (.fq) | 50.29 Gbp | N/A | 28.9 GiB | |
PacBio HiFi (.bam) | 376.35 Gbp | N/A | 216.0 GiB | ||
Arima | 68.79 Gbp | N/A | 36.6 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 20 March 2024.
Coverage based on genome size .
Last upload on 20 March 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 21 December 2023
bAnoHya1.HiC.hap1.20231221.fasta.gz (315.2 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 21 December 2023
bAnoHya1.HiC.hap1.20231221.fasta.gz (315.2 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 54.47 Mbp | 1 | 167.34 Mbp |
20 | 5 | 36.95 Mbp | 2 | 162.36 Mbp |
30 | 8 | 33.72 Mbp | 3 | 129.35 Mbp |
40 | 12 | 30.00 Mbp | 3 | 129.35 Mbp |
50 | 16 | 23.42 Mbp | 4 | 124.19 Mbp |
60 | 22 | 15.33 Mbp | 5 | 96.24 Mbp |
70 | 30 | 10.72 Mbp | 7 | 65.26 Mbp |
80 | 43 | 5.96 Mbp | 9 | 27.57 Mbp |
90 | 71 | 2.67 Mbp | 15 | 8.68 Mbp |
100 | 554 | 14.23 Kbp | 419 | 14.23 Kbp |
1.000x | 554 | 1.11 Gbp | 419 | 1.11 Gbp |
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 21 December 2023
bAnoHya1.HiC.hap2.20231221.fasta.gz (357.9 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 21 December 2023
bAnoHya1.HiC.hap2.20231221.fasta.gz (357.9 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 57.03 Mbp | 1 | 167.23 Mbp |
20 | 6 | 32.44 Mbp | 2 | 162.85 Mbp |
30 | 10 | 30.14 Mbp | 3 | 129.99 Mbp |
40 | 15 | 22.30 Mbp | 4 | 124.67 Mbp |
50 | 22 | 17.96 Mbp | 5 | 106.27 Mbp |
60 | 30 | 14.39 Mbp | 6 | 96.60 Mbp |
70 | 42 | 7.95 Mbp | 8 | 66.23 Mbp |
80 | 64 | 4.89 Mbp | 10 | 45.77 Mbp |
90 | 105 | 1.89 Mbp | 23 | 6.31 Mbp |
100 | 628 | 14.29 Kbp | 450 | 14.29 Kbp |
1.000x | 628 | 1.30 Gbp | 450 | 1.30 Gbp |
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 5 January 2024
bAnoHya1.MT.20240105.fasta.gz (5.8 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 5 January 2024
bAnoHya1.MT.20240105.fasta.gz (5.8 KiB)
Quality: not computed
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.