Anser erythropus

Lesser white-fronted goose

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: bAnsEry
  name: Anser erythropus
  taxon_id: 132586
  common_name: Lesser white-fronted goose
  order:
    name: Anseriformes
  family:
    name: Anatidae
  individuals:
    - short_name: bAnsEry1
      biosample_id: SAMEA113398961
      sex: male
  genome_size: 1378980000
  genome_size_method: GoaT
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) bAnsEry1 69.81 Gbp 50.62x 21.4 GiB
Arima bAnsEry1 71.76 Gbp 52.04x 20.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 1 April 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bAnsEry1 PacBio HiFi (.bam) 69.81 Gbp 50.62x 21.4 GiB
Arima 71.76 Gbp 52.04x 20.4 GiB
Bases and Coverage are approximate.
Coverage based on genome size 1.38 Gbp.
Last upload on 1 April 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_cambridge from 5 April 2024
bAnsEry1.hap1.asm.20240405.fasta.gz (326.5 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 18 6.33 Mbp 1 215.45 Mbp
20 44 4.82 Mbp 2 161.80 Mbp
30 76 3.91 Mbp 3 122.06 Mbp
40 116 3.04 Mbp 4 80.25 Mbp
50 168 2.29 Mbp 6 66.96 Mbp
60 238 1.73 Mbp 9 34.04 Mbp
70 336 1.18 Mbp 15 22.97 Mbp
80 482 0.75 Mbp 24 7.60 Mbp
90 773 285.79 Kbp 118 0.56 Mbp
100 0 0
0.966x 1851 1.33 Gbp 990 1.33 Gbp
NG based on genome size 1.38 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_cambridge from 5 April 2024
bAnsEry1.hap2.asm.20240405.fasta.gz (297.6 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 16 7.08 Mbp 1 212.18 Mbp
20 40 4.83 Mbp 2 160.75 Mbp
30 73 3.70 Mbp 3 121.93 Mbp
40 116 2.83 Mbp 4 80.43 Mbp
50 173 2.06 Mbp 7 39.18 Mbp
60 249 1.51 Mbp 11 23.13 Mbp
70 366 0.94 Mbp 18 17.62 Mbp
80 591 380.39 Kbp 67 0.85 Mbp
90 0 0
100 0 0
0.853x 1265 1.18 Gbp 584 1.18 Gbp
NG based on genome size 1.38 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_cambridge from 5 April 2024
bAnsEry1.MT.20240405.fasta.gz (5.0 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.