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Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.fq) | fAtrSpa1 | 81.08 Gbp | N/A | 43.8 GiB | |
PacBio HiFi (.bam) | fAtrSpa1 | 81.42 Gbp | N/A | 331.1 GiB | |
Arima | fAtrSpa1 | 54.67 Gbp | N/A | 29.6 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 11 April 2024.
Coverage based on genome size .
Last upload on 11 April 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
fAtrSpa1 | PacBio HiFi (.fq) | 81.08 Gbp | N/A | 43.8 GiB | |
PacBio HiFi (.bam) | 81.42 Gbp | N/A | 331.1 GiB | ||
Arima | 54.67 Gbp | N/A | 29.6 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 11 April 2024.
Coverage based on genome size .
Last upload on 11 April 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 21 April 2024
fAtrSpa1.HiC.hap1.20240421.fasta.gz (306.0 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 21 April 2024
fAtrSpa1.HiC.hap1.20240421.fasta.gz (306.0 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 48.75 Mbp | 2 | 76.71 Mbp |
20 | 5 | 39.48 Mbp | 3 | 74.80 Mbp |
30 | 8 | 33.86 Mbp | 5 | 65.43 Mbp |
40 | 12 | 28.57 Mbp | 7 | 62.18 Mbp |
50 | 16 | 24.56 Mbp | 9 | 55.31 Mbp |
60 | 21 | 21.07 Mbp | 11 | 46.49 Mbp |
70 | 27 | 16.46 Mbp | 13 | 38.75 Mbp |
80 | 37 | 9.55 Mbp | 19 | 17.00 Mbp |
90 | 57 | 2.30 Mbp | 28 | 7.14 Mbp |
100 | 411 | 11.39 Kbp | 346 | 11.39 Kbp |
1.000x | 411 | 1.12 Gbp | 346 | 1.12 Gbp |
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 21 April 2024
fAtrSpa1.HiC.hap2.20240421.fasta.gz (317.4 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 21 April 2024
fAtrSpa1.HiC.hap2.20240421.fasta.gz (317.4 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 49.53 Mbp | 2 | 79.37 Mbp |
20 | 6 | 38.25 Mbp | 4 | 74.65 Mbp |
30 | 9 | 31.57 Mbp | 5 | 65.16 Mbp |
40 | 13 | 27.17 Mbp | 7 | 65.09 Mbp |
50 | 18 | 23.01 Mbp | 9 | 54.68 Mbp |
60 | 24 | 18.13 Mbp | 12 | 44.25 Mbp |
70 | 30 | 17.08 Mbp | 16 | 19.29 Mbp |
80 | 40 | 9.58 Mbp | 22 | 17.71 Mbp |
90 | 60 | 2.89 Mbp | 33 | 6.79 Mbp |
100 | 323 | 18.98 Kbp | 281 | 18.98 Kbp |
1.000x | 323 | 1.20 Gbp | 281 | 1.20 Gbp |
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 21 April 2024
fAtrSpa1.MT.20240421.fasta.gz (5.2 KiB)
Quality: not computed
Version assembly_MT_rockefeller from 21 April 2024
fAtrSpa1.MT.20240421.fasta.gz (5.2 KiB)
Quality: not computed
Assembly Metadata
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.