Bombina variegata

yellow-bellied toad

Included in the VGP.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: aBomVar
  name: Bombina variegata
  taxon_id: 8348
  common_name: yellow-bellied toad
  order:
    name: Anura
  family:
    name: Bombinatoridae
  individuals:
    - short_name: aBomVar4
      biosample_id: SAMEA112651403
      sex: male
  genome_size: 8958480000
  genome_size_method: GoaT
  data_use_project: erga
  project: [ vgp ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.bam) aBomVar4 237.29 Gbp 26.49x 88.6 GiB
Arima aBomVar4 946.31 Gbp 105.63x 282.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 8.96 Gbp.
Last upload on 8 August 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
aBomVar4 PacBio HiFi (.bam) 237.29 Gbp 26.49x 88.6 GiB
Arima 946.31 Gbp 105.63x 282.1 GiB
Bases and Coverage are approximate.
Coverage based on genome size 8.96 Gbp.
Last upload on 8 August 2023.
Assemblies
Individual 4 Maternal Assembly
Version assembly_cambridge from 27 March 2024
aBomVar4.mat.asm.20240327.fasta.gz (2.5 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 160 4.34 Mbp 1 1.40 Gbp
20 400 3.30 Mbp 2 1.23 Gbp
30 699 2.70 Mbp 3 1.12 Gbp
40 1066 2.20 Mbp 3 1.12 Gbp
50 1515 1.81 Mbp 4 1.08 Gbp
60 2058 1.48 Mbp 5 1.02 Gbp
70 2735 1.18 Mbp 6 0.97 Gbp
80 3607 0.89 Mbp 7 0.52 Gbp
90 4820 0.60 Mbp 10 181.07 Mbp
100 7005 256.74 Kbp 496 398.87 Kbp
1.047x 11435 9.38 Gbp 4817 9.38 Gbp
NG based on genome size 8.96 Gbp.
Individual 4 Paternal Assembly
Version assembly_cambridge from 27 March 2024
aBomVar4.pat.asm.20240327.fasta.gz (2.4 GiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 167 4.06 Mbp 1 1.35 Gbp
20 422 3.15 Mbp 2 1.23 Gbp
30 739 2.53 Mbp 3 1.11 Gbp
40 1131 2.08 Mbp 3 1.11 Gbp
50 1607 1.70 Mbp 4 1.05 Gbp
60 2192 1.37 Mbp 5 0.97 Gbp
70 2925 1.08 Mbp 6 0.94 Gbp
80 3880 0.81 Mbp 8 314.67 Mbp
90 5247 0.52 Mbp 12 134.51 Mbp
100 8171 141.69 Kbp 1420 142.22 Kbp
1.016x 10300 9.10 Gbp 3559 9.10 Gbp
NG based on genome size 8.96 Gbp.
Individual 4 Mitochondrial Assembly
Version assembly_MT_cambridge from 27 March 2024
aBomVar4.MT.20240327.fasta.gz (5.6 KiB)

Quality: not computed
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the ERGA Pilot Project Official Guidelines and contact ERGA with any questions.