Branta leucopsis
barnacle goose
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
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CC BY 2.0 Bengt Nyman (flickr)
Raw Data by Technology
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 29 February 2024.
Coverage based on genome size .
Last upload on 29 February 2024.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
bBraLeu1 | PacBio CLR | 62.56 Gbp | N/A | 111.9 GiB | |
Bionano | N/A | N/A | 2.7 GiB | ||
bBraLeu2 | PacBio HiFi (.bam) | 63.30 Gbp | N/A | 30.5 GiB | |
Arima | 121.00 Gbp | N/A | 37.2 GiB |
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 29 February 2024.
Coverage based on genome size .
Last upload on 29 February 2024.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_cambridge from 29 February 2024
bBraLeu2.hap1.asm.20240229.fasta.gz (363.6 MiB)
Quality: not computed
Version assembly_cambridge from 29 February 2024
bBraLeu2.hap1.asm.20240229.fasta.gz (363.6 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 14 | 7.15 Mbp | 1 | 212.45 Mbp |
20 | 35 | 5.48 Mbp | 2 | 162.98 Mbp |
30 | 64 | 4.14 Mbp | 3 | 122.10 Mbp |
40 | 100 | 3.35 Mbp | 4 | 78.64 Mbp |
50 | 143 | 2.81 Mbp | 6 | 66.90 Mbp |
60 | 196 | 2.17 Mbp | 9 | 34.14 Mbp |
70 | 268 | 1.57 Mbp | 13 | 23.15 Mbp |
80 | 375 | 1.03 Mbp | 21 | 11.85 Mbp |
90 | 549 | 0.55 Mbp | 53 | 1.83 Mbp |
100 | 1616 | 1.00 Kbp | 892 | 1.00 Kbp |
1.000x | 1616 | 1.33 Gbp | 892 | 1.33 Gbp |
NG based on genome size .
Individual 2 Haplotype 2 Assembly
Version assembly_cambridge from 29 February 2024
bBraLeu2.hap2.asm.20240229.fasta.gz (337.9 MiB)
Quality: not computed
Version assembly_cambridge from 29 February 2024
bBraLeu2.hap2.asm.20240229.fasta.gz (337.9 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 12 | 8.29 Mbp | 1 | 211.15 Mbp |
20 | 29 | 5.98 Mbp | 2 | 163.21 Mbp |
30 | 54 | 4.42 Mbp | 2 | 163.21 Mbp |
40 | 85 | 3.39 Mbp | 3 | 121.51 Mbp |
50 | 125 | 2.84 Mbp | 5 | 65.94 Mbp |
60 | 173 | 2.26 Mbp | 8 | 38.48 Mbp |
70 | 235 | 1.71 Mbp | 12 | 22.76 Mbp |
80 | 322 | 1.18 Mbp | 18 | 16.63 Mbp |
90 | 459 | 0.66 Mbp | 41 | 2.35 Mbp |
100 | 1108 | 1.00 Kbp | 498 | 1.00 Kbp |
1.000x | 1108 | 1.23 Gbp | 498 | 1.23 Gbp |
NG based on genome size .
Individual 2 Mitochondrial Assembly
Version assembly_MT_cambridge from 29 February 2024
bBraLeu2.MT.20240229.fasta.gz (5.3 KiB)
Quality: not computed
Version assembly_MT_cambridge from 29 February 2024
bBraLeu2.MT.20240229.fasta.gz (5.3 KiB)
Quality: not computed
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.