Buteo lineatus

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Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) bButLin1 86.43 Gbp N/A 39.4 GiB
PacBio HiFi (.bam) bButLin1 87.45 Gbp N/A 288.1 GiB
Arima bButLin1 108.52 Gbp N/A 56.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 17 November 2025.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
bButLin1 PacBio HiFi (.fq) 86.43 Gbp N/A 39.4 GiB
PacBio HiFi (.bam) 87.45 Gbp N/A 288.1 GiB
Arima 108.52 Gbp N/A 56.5 GiB
Bases and Coverage are approximate.
Coverage based on genome size .
Last upload on 17 November 2025.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 2 December 2025
bButLin1.HiC.hap1.20251202.fasta.gz (340.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 77.17 Mbp 2 86.03 Mbp
20 4 56.33 Mbp 4 78.23 Mbp
30 7 46.92 Mbp 5 70.48 Mbp
40 10 44.48 Mbp 8 54.03 Mbp
50 13 33.14 Mbp 10 46.92 Mbp
60 17 29.04 Mbp 13 45.25 Mbp
70 22 26.52 Mbp 16 34.73 Mbp
80 28 17.85 Mbp 21 26.58 Mbp
90 37 6.77 Mbp 26 20.68 Mbp
100 451 14.47 Kbp 395 14.47 Kbp
1.000x 451 1.32 Gbp 395 1.32 Gbp
NG based on genome size .
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 2 December 2025
bButLin1.HiC.hap2.20251202.fasta.gz (333.4 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 79.94 Mbp 2 85.34 Mbp
20 4 58.56 Mbp 3 79.94 Mbp
30 6 47.67 Mbp 5 70.16 Mbp
40 9 42.87 Mbp 7 55.43 Mbp
50 12 34.07 Mbp 10 46.95 Mbp
60 17 28.23 Mbp 13 45.02 Mbp
70 21 25.34 Mbp 15 40.32 Mbp
80 27 18.73 Mbp 19 31.56 Mbp
90 37 8.29 Mbp 24 24.09 Mbp
100 255 10.09 Kbp 169 10.09 Kbp
1.000x 255 1.27 Gbp 169 1.27 Gbp
NG based on genome size .
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 December 2025
bButLin1.MT.20251202.fasta.gz (4.9 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_HiC_2.0/bButLin1.yml (view)
species: Buteo lineatus
specimem: bButLin1
projects:
  - vgp
assembled_by_group: Rockefeller
data_location: S3
release_to: S3
combine_for_curation: true
hap1: s3://genomeark/species/Buteo_lineatus/bButLin1/assembly_vgp_HiC_2.0/bButLin1.HiC.hap1.20251202.fasta.gz
hap2: s3://genomeark/species/Buteo_lineatus/bButLin1/assembly_vgp_HiC_2.0/bButLin1.HiC.hap2.20251202.fasta.gz
pretext_hap1: s3://genomeark/species/Buteo_lineatus/bButLin1/assembly_vgp_HiC_2.0/evaluation/hap1/pretext/s2/bButLin1_hap1__s2_heatmap.pretext
pretext_hap2: s3://genomeark/species/Buteo_lineatus/bButLin1/assembly_vgp_HiC_2.0/evaluation/hap2/pretext/s2/bButLin1_hap2__s2_heatmap.pretext
kmer_spectra_img: s3://genomeark/species/Buteo_lineatus/bButLin1/assembly_vgp_HiC_2.0/evaluation/merqury/bButLin1_png/
pacbio_read_dir: s3://genomeark/species/Buteo_lineatus/bButLin1/genomic_data/pacbio_hifi/
pacbio_read_type: hifi
hic_read_dir: s3://genomeark/species/Buteo_lineatus/bButLin1/genomic_data/arima/
pipeline:
  - hifiasm (0.25.0+galaxy0)
  - yahs (1.2a.2+galaxy3)
  - VGP0 mitoHiFi workflow (v0.2.2)
  - VGP1 genomic profiling workflow (v0.6)
  - VGP4 HiFi HiC assembly workflow (v0.4)
  - VGP8 HiC scaffolding workflow (v3.2) with mapq=10
  - VGP9 decontamination workflow (v1.2) 
  - Pre-curation worklfow (v1.0beta6) with mapq=10
notes: This was a Hifiasm-HiC assembly of bButLin1 resulting in two haplotype assemblies. HiC data were generated using the Arima library prep kit, and require trimming the first 5 bp off from the 5' end of both read files. The restriction enzymes used were the Arima v2 kit, so the cutting sites are GATC, GANTC, CTNAG, TTAA. The mitochrondial genome assembled in mitoHiFi was not circular.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.