Caretta caretta
Loggerhead turtle
Included in the VGP.
- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -
metadata.yaml (view) (edit on github) |
---|
CC BY-SA 4.0 Eco cruising (Wikimedia)
Raw Data by Technology
Datatype | Individual | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
PacBio HiFi (.fq) | rCarCar2 | 119.89 Gbp | 46.43x | 99.9 GiB | |
Dovetail Genomics | rCarCar2 | 272.67 Gbp | 105.61x | 142.8 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.58 Gbp.
Last upload on 14 June 2023.
Coverage based on genome size 2.58 Gbp.
Last upload on 14 June 2023.
Raw Data by Individual
Individual | Datatype | Bases | Coverage | Bytes | Access |
---|---|---|---|---|---|
rCarCar2 | PacBio HiFi (.fq) | 119.89 Gbp | 46.43x | 99.9 GiB | |
Dovetail Genomics | 272.67 Gbp | 105.61x | 142.8 GiB |
Bases and Coverage are approximate.
Coverage based on genome size 2.58 Gbp.
Last upload on 14 June 2023.
Coverage based on genome size 2.58 Gbp.
Last upload on 14 June 2023.
Assemblies
Individual 2 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 22 April 2023
rCarCar2.HiC.hap1.20230422.fasta.gz (646.2 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 22 April 2023
rCarCar2.HiC.hap1.20230422.fasta.gz (646.2 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 1 | 354.29 Mbp | 1 | 355.49 Mbp |
20 | 2 | 185.93 Mbp | 2 | 271.82 Mbp |
30 | 4 | 142.03 Mbp | 3 | 212.07 Mbp |
40 | 6 | 128.51 Mbp | 5 | 137.54 Mbp |
50 | 8 | 121.38 Mbp | 7 | 127.11 Mbp |
60 | 10 | 102.30 Mbp | 9 | 103.74 Mbp |
70 | 15 | 28.00 Mbp | 12 | 49.75 Mbp |
80 | 29 | 11.70 Mbp | 20 | 23.92 Mbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.859x | 97 | 2.22 Gbp | 41 | 2.22 Gbp |
NG based on genome size 2.58 Gbp.
Individual 2 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 22 April 2023
rCarCar2.HiC.hap2.20230422.fasta.gz (642.6 MiB)
Quality: not computed
Version assembly_vgp_HiC_2.0 from 22 April 2023
rCarCar2.HiC.hap2.20230422.fasta.gz (642.6 MiB)
Quality: not computed
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 186.77 Mbp | 1 | 356.83 Mbp |
20 | 3 | 147.94 Mbp | 2 | 271.92 Mbp |
30 | 5 | 141.47 Mbp | 3 | 213.09 Mbp |
40 | 7 | 122.12 Mbp | 5 | 137.61 Mbp |
50 | 9 | 116.35 Mbp | 7 | 127.02 Mbp |
60 | 12 | 71.57 Mbp | 9 | 103.97 Mbp |
70 | 18 | 33.88 Mbp | 12 | 49.24 Mbp |
80 | 30 | 13.77 Mbp | 21 | 22.77 Mbp |
90 | 0 | 0 | ||
100 | 0 | 0 | ||
0.854x | 84 | 2.21 Gbp | 35 | 2.21 Gbp |
NG based on genome size 2.58 Gbp.
Data Use Policy
Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.